SelenoDB
Release 2.0
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Gene Report for SPG00000017_2.0
Identity
GeneSelenocysteine synthase (SecS)
SpeciesHomo sapiens (Human)
DescriptionThe amino acid selenocysteine is the only amino acid that does not have its own tRNA synthetase. Instead, this amino acid is synthesized on its cognate tRNA in a three step process. The protein encoded by this gene catalyzes the third step in the process, the conversion of O-phosphoseryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec). (NCBI)
FamilySelenocysteine synthase
SynonymsNone
SubfamilyNone
SynonymsNone
Gene IDSPG00000017
Gene release2.0
External ID ENSG00000109618.7 (Ensembl)
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
Curated external database annotation (GENCODE, 15) [Report annotation error]
Conceptual translation (Translate, Standard code with Sec) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

Gene
Transcript(s) Promoter(s) Protein(s) Secis
SPT00000059_2.0SPR00000076_2.0SPP00000065_2.0N/A
SPT00000060_2.0SPR00000077_2.0SPP00000066_2.0N/A
Genetic
Differentiation
FST
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.416
Middle East0.7690.633
Europe0.7120.6140.566
Central-South Asia0.7060.6360.6020.578
East Asia0.5980.4730.5320.4940.363
Oceania0.6390.5110.5700.5820.5550.593
America0.5450.3510.4370.3990.3990.4710.443

High FST

Low FST

P-value
AfricaMiddle EastEuropeCentral-South AsiaEast AsiaOceaniaAmerica
Africa0.082
Middle East0.0000.131
Europe0.0000.0000.000
Central-South Asia0.0000.0000.0000.000
East Asia0.0000.0000.0000.0000.000
Oceania0.0000.0110.0020.0000.0010.167
America0.0000.0020.0000.0000.0000.0900.099

Low P-value

High P-value

Sequence
Sequence SEQ00000017_2.0
External ID ENSG00000109618.7 (Ensembl)
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