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Release
2.0
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Gene
Transcript
Promoter
Protein
SECIS
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Keyword
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Gene Report for SPG00003225_2.0
Identity
Gene
SECIS binding protein 2 (SBP2)
Species
Ictalurus punctatus
(Channel catfish)
Description
None
Family
SECIS binding protein 2
Synonyms
SECIS binding protein 2 (SECISBP2)
Subfamily
None
Synonyms
None
Gene ID
SPG00003225
Gene release
2.0
External ID
None
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A)
[
Report annotation error
]
Thermodynamic pattern-based SECIS prediction (SECISearch, 3.0)
[
Report annotation error
]
(Selenoprofiles, Ensembl 68)
[
Report annotation error
]
Conceptual translation (Translate, Standard code with Sec)
[
Report annotation error
]
Orientation
Forward (Reverse in the original sequence)
Structure
Feature
Col
Promoter
Col
Coding exon
Col
Non coding exon (UTR)
Col
Intron
Col
SECIS
Residue
Col
Sec
Col
Cys or Other
Gene
Transcript(s)
Promoter(s)
Protein(s)
Secis
SPT00003347_2.0
SPR00003414_2.0
SPP00003301_2.0
SPS00001585_2.0
Sequence
Sequence
SEQ00003220_2.0
External ID
None
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Adder (Vipera berus)
Angola colobus (Colobus angolensis)
Asian bonytongue (Scleropages formosus)
Channel catfish (Ictalurus punctatus)
Coquerel's sifaka (Propithecus coquereli)
Desert woodrat (Neotoma lepida)
Egyptian fruit bat (Rousettus aegyptiacus)
Gecko (Gekko japonicus)
Gharial (Gavialis gangeticus)
Giant mudskipper (Periophthalmodon schlosseri)
Great Tit (Parus major)
High Himalaya frog (Nanorana parkeri)
Ma's night monkey (Aotus nancymaae)
Mi-iuy croaker (Miichthys miiuy)
Monterrey platyfish (Xiphophorus couchianus)
Natal long-fingered bat (Miniopterus natalensis)
Pangolin (Manis javanica)
test (Test test)
Walrus (Odobenus rosmarus)
West Indian manatee (Trichechus manatus)
White-faced sapajou (Cebus capucinus)
Human (Homo sapiens)
Chimpanzee (Pan troglodytes)
Western wild mouse (Mus spretus)
Mouse (Mus musculus)
Tetraodon (Tetraodon nigroviridis)
Fruitfly (Drosophila melanogaster)
Worm (Caenorhabditis elegans)
Yeast (Saccharomyces cerevisiae)
Alpaca (Vicugna pacos)
Anole lizard (Anolis carolinensis)
Armadillo (Dasypus novemcinctus)
Bushbaby (Otolemur garnettii)
Cat (Felis catus)
Chicken (Gallus gallus)
Softshell turtle (Pelodiscus sinensis)
Cod (Gadus morhua)
Coelacanth (Latimeria chalumnae)
Cow (Bos taurus)
Dog (Canis lupus)
Dolphin (Tursiops truncatus)
Elephant (Loxodonta africana)
Fugu (Takifugu rubripes)
Gibbon (Nomascus leucogenys)
Gorilla (Gorilla gorilla)
Guinea Pig (Cavia porcellus)
Hedgehog (Erinaceus europaeus)
Horse (Equus caballus)
Hyrax (Procavia capensis)
Kangaroo rat (Dipodomys ordii)
Lamprey (Petromyzon marinus)
Lesser hedgehog (Echinops telfairi)
pig-tailed macaque (Macaca nemestrina)
Macaque (Macaca mulatta)
Marmoset (Callithrix jacchus)
Medaka (Oryzias latipes)
Megabat (Pteropus vampyrus)
Microbat (Myotis lucifugus)
Mouse Lemur (Microcebus murinus)
Opossum (Monodelphis domestica)
Orangutan (Pongo abelii)
Panda (Ailuropoda melanoleuca)
Pig (Sus scrofa)
Pika (Ochotona princeps)
Platypus (Ornithorhynchus anatinus)
Rabbit (Oryctolagus cuniculus)
Rat (Rattus norvegicus)
Sea Squirt (Ciona intestinalis)
Sea Squirt (Ciona savignyi)
Shrew (Sorex araneus)
Sloth (Choloepus hoffmanni)
Squirrel (Ictidomys tridecemlineatus)
Stickleback (Gasterosteus aculeatus)
Tarsier (Tarsius syrichta)
Tasmanian devil (Sarcophilus harrisii)
Tilapia (Oreochromis niloticus)
Tree Shrew (Tupaia belangeri)
Turkey (Meleagris gallopavo)
Wallaby (Macropus eugenii)
Xenopus (Xenopus tropicalis)
Zebra Finch (Taeniopygia guttata)
Zebrafish (Danio rerio)
Species for
All
CELF1
DI
eEFSec
EIF4A3
ELAVL1
Fep15
FrnE
G6PD
GPx
LRP2
LRP8
MsrA
PSTK
RPL30
SARS2
SBP2
SCLY
SECp43
SecS
Sel15
SELENBP1
SelH
SelI
SelJ
SelK
SelL
SelM
SelN
SelO
SelP
SelR
SelS
SelT
SelU
SelV
SelW
SEPSECS
SPS
TR
TTPA
XPO1
Family
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Cite
S. Castellano, V.N. Gladyshev, R. Guigó and M.J. Berry
SelenoDB: a database of selenoprotein genes, proteins and SECIS elements
Unpublished
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