SelenoDB
Release 2.0
Chart Advanced
Promoter Report for SPR00002028_2.0
Identity
PromoterMethionine sulfoxide reductase A (MsrA)
SpeciesOryzias latipes (Medaka)
Promoter IDSPR00002028
Promoter release2.0
External IDNone
Transcript SPT00001963_2.0
Annotation
Prediction method(s)
Promoter prediction (5000bp upstream, N/A) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxForward   Reverse    
Sequence
>SPR00002028_2.0 # Promoter # Methionine sulfoxide reductase A (MsrA) # Medaka (Oryzias latipes) Full length # Reverse
TGACAAAGTGACGCCAAATCGGTCGAAGCAACGAGGCTGAAACCATGGACCCGAACCGGA
ACCGACCTGCGCGCAGCCTGAAGGGAGGAGCCGTGCCAGTTCCGCTGCACGAGGGCGCGC
TTTCCCAACAGCTTGTGTAACAACGGCCCGTGCGCGTTACATAAGCACGTGCACGATTAT
TACCTAAAGGAAAACATCGTTTCGGCTCCTTTAAAGTGTGAAACTGATCATCGTTCAATA
ATCAGATCTGACTCCTGGAGGAAAAGACACGCGCGTCTATATCCAACACAAGCGCGCGCG
CATAACCTGACTTTATTCTGGTCTCAGGTTCAATGTTTAGTAGAAAGATCTAGGGACCGG
AAACAGCTGATGTGCTCTTCCAGTTTCTCCACCAACTTATAATTTTCCGCGCGGGTTTTT
ATCTTCCACTCTCAGCAAGTTTACATCATTACAGTCTGGGTTTATTTATGTTTAATAAGA
ACATTCAAAATGCTTTTTTAGAATTAAAATACAAAGTAAATCAGACAAACAGGAATAATT
CTGGAAAAATCCAGATCAGAGTCGTTAATTTAAATCATTAGATTGCAGATGACAGCTCAT
CACTCACGCTCCCTTTGATGATTAAAGACAGAATTTACAGACTAGAACTCTGGGAATGTT
ATTTAAAGGAAGTTGAAACTCTAAAAACAAAGCAAAGAAAATAGAGTTTTCATCTCTAAA
TCTGATAACAGCGTAGAAACCTACTCCAATAAAAACACTGTTTTTGGTGTTTCTAACATG
TTCTGTGGCATTTTTCTGATGTTGGAGGACATTTATAATGAAAATTAAGCTTAACATTGC
ATTTAGGATTTCTTACAGTTTGTTGTAAAGCTAAGCCCATTCAGACGACTGTTGTTCGGA
TTTTGGGCTATATAAATCAAATTGAACTGTAAATTGAATCAAATCAGGATCAGATGAAAA
AAGGCTGTTAGAAAAAGATCGTATTTGTGACGCAGCAGATACGTGGGGCGGAGCCACAGG
CTCCCTGCTCCGCCCCTTTCTGATCATCCACCTGCAGACAAACTGATTCTTGGTTTTCCT
GGTCTGAGCTGGAATCTGGATCTAGGCTCAGATTTTGCTTATGTTTGCTGCAGCAGTAAT
TTCTGACAAAGTTCTCCCGTTCTGCAGAAACTTAGAAAACGCATTTTGCATTTTTGACTA
AAAACGGCGTCACCCTGATGAAAACAGCTCTCAACATTCTATTTTTCGTTCATTGGTTTA
TTTTCCTCATTGGAGACTTTTTCCTGCATTTATCTGTGTTTCATAATTCAGGATTCTTTT
CTGTAACATCACGTGATGTAACTATTTAAAATGATTGACAGCTTCTGTCTGCCACATTTA
GATGTTTTTCTGCATCTGTCCGCATAAAGTAGACCTGCAAACCTTCCTGAGGAAATTGGT
TTTGCAAACCAATTTCCTCAGGAAGACCCTCAGGATGATGGAGGAGAACCTCCTTTAGCA
TCAGAGCACGACATGCTCTGGGGCCTCATTTCTAAAGGTTGCGTACGCACAAAAGAAGGC
GTACGCCACTCTCTACGCAATAGTTGAGATTTATAAAAAGCAAACTTGACGGGAAAATGT
GCGGTCCTTCAAGCTCTGACCCAGGCGTACGCACAAAAACGGGTGAAATGAGAAACGGCG
ACACCGTCGGCAGATGGAAGAAACACGTGAAAGTGAAAATGACAATACTTCCTCTCAGAA
ATAACATGAAGACTTCACAAAGCAAGTCTGACAATTAACATCTACACCAACACCCGTTTG
ATCGATCAGCAGTGAAACAAACAAAAAAAAATCAAACGAAAATTACAACAGAAATTCAAA
TGAACACTTATTTGCAGAAAGAAAAGTGAAATATGTTCTGCAATATTGGCATGTTGTGCA
ATTCATCCTCATAAATAATATAGTTAACAGAACAAAATAATGTACAAAACTGATATTCCC
GTCAATGTGTCCGTCTGGCGGAGCAGATATAGGTGCAATCAGACAGACAGATGGATAGAT
AGAGAGAGATGCATTAATTGTCCACTGTGGAAAGTTGTTTTCATATTAAAACATTTCTTC
ATAAGCTACAGAATTATGGTATTCATGCATATGCCTTTAGTTTGTTTTATTTTTGATAAA
ACAATGTATGGCGTATGTCTCAACCATTCAGAAAGCAACAAGAAATTACATTTGCGCTGA
TCAATTTCCCATTTCCACGTCGATTATTACCAACATCTGCAGCTTGTCAGATGTAATTAA
ATGGAGGGAAATAAAATGCCCCATCACAATGCGTAATGACGCACAATGGCTGATCTTGCG
CTCTTAGAAGATGTGGCAAATGGAAGAATTCGGAGTGAACGCATCTTTAGACAGCAAGAA
GACTTGCTGGCAAACGAGGACGAGTGGCTTATGAGCCGGTTCAGACTTCCTCTGCGGGCT
TTTGGGGGGGTGTCACCCGGTGCATCTGGCGCGTCGGTGTCCCCCTGCGCCTCAGTCACC
ACTCCACTTAAAAGGGATTCCCCAATTATTGCCGCCANNNNNNNNNNCCCCCTGGGAAAA
AAAGGGGTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGTCAGCGCTAGACGTTTTTTG
GCCTCGACTTTGATGTCCGACCATTTCTTCTTTATTTCGGCCACGGTCTGAGGTTGTGAG
GCTACAGCATTTGGCGTCTGCCACCGTTTGCCACTCACGTGCCTTTTTGGCATTAGTAAT
GCCCACACTGTGCCCTCCAAACAACATTATTCTCCTCTTTTCCACCTCGCCAACGATAAC
TTCTACTTCACATTGAGTGAAGTTACGTTTTTTTGATTTCCTCTCTGTGTTTGGCATGGT
TTCCCAATCAATGAATATTCATTTGTGGGCGTTTCACGGACTATTTATGGGCAACTATAG
GCGTGTCATAAAGCCGCAAAAGCTGCGCTGCATTTAGAATTGGTTGTGATTTATTAAGGG
AAAGATGCGTAGGATGTGCGTGCGCACGGTTTTATAACTCCGAATATTTCTGTGCGTACG
CACGTCCTATGTTTCATCCGTACGCCACTTCTGACGCAAATCCTACGCAAAGTTTTAGAA
ATGAGGCCCCAGGTGATGCTAAGAGAGTAGCATCCTCTGACAGATTTTGGACCGATTGCC
TCTGGACAATCGATGTGCCCCCTTCCTGCGTCTTCTGCAGCAGACCCAGCCCTCAGCATG
ATACTCCCACCCTCATGTCTGAGTCTGCAAACTGTGTTTTTACCCAGAAAGGCTTGTCCG
ATGTTTCAGGGGTGCACAAACATGAATGTCTGGGACAGATTTCTGGATGCTGATCTGAGT
GGATCCCAAAAGCCTGATAAGGTGTAAAGAATGGTTTTTCATCAAACAGAACGATTTTCC
TTGCATTGGTTTCCATGGTTACAGCTCATTCTAAATTAGCATCACAGGAACGATTTGTCT
GAGGAGCACCTTGGAGACACACATCTCCTTCTCAGCGTTCGTGAAGCGTCTGTTCTCTGT
GTTCTCAAAACCACCGCGGTCACAGCAGGAGCTTTGTCTGCATGAGGAGTTTCTGCTCAT
CCTTTTGTGTCACAAACACCGCTGATCCAATCCCCACAGTTTACGGCATCCCTTCCATCA
CCCGTCATCGGATGAACCAGAGGAGGAAGGAAGCGGAATCTCGGAGAATCTGCTGATGCA
AACCTTTGGCCTCCGCAGCTCATTGTGTTGTTTTCTGAGATCATTTGGAGGAATTGATGT
CACACGGAGCGACCCTTTTGTATCTTCTGAGGCAGATGCTTTCACTGTCGTTCCTCCCTC
CTCCCACGGAGGACGGGATGGAGGGGGATGGAAAGCAGAGGGAGGAGAGAACTGCCTCCA
TGACTAGAACCTCCCCCTCTCCTCTCTCCCCACTTGACTGCGCCCAGATCCTCTCCCTCC
ATCCCGCCTCTCCTCTCGGCGGACTGACTGCACCCAGCGCGCAGAACCCGACATTTGACG
GTTCTGGATCGGGTTGGACCGGGGCTAGTCTGTCCTTTTGCGCCTGGACTACGACTGCTT
TGTGGGCTTCTCTGGAGAAAAAAGTCCAGAAAGGACGCTCTGCATCCCTCGCAGCATCAT
CCCCCCGCATCCGCAGCATCAGGACCACAGAGGAGAGGCGCACCGACCAAGACGGTAAAG
CCTCTGCCTGACGGAACCCCTGCTTTTTTCACAACCGTTTGTTCGACGTTGTTAACCCGT
TTTCCCGCGTGTGTTTTTGATGTCATTGTTCACGCGCTCCTCCTTCCTCCGTGGGAGATG
TGCTCTCAAACGCCGCAGTGCCGTCGCGCTCTGCGGAATTCAGCATCCGACTCCCTTTTT
TCAGCTACAGCGATTTTCCGCGCACGGTGCGCGCACAAACCCCACTGCAAATGCGCAGTC
GCATTAAACATGAGCGGCTTTTCTCCATCAGGTACCCTCACCCCCACCCCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGC
AGCTGATGCTGGATGCGGCGCTGTTGAAGCACGCGCAGCATCAGCATCTTTCCTGCGCGT
TCTGCCCAGCAGGAAGCGTCGGGTTGTTCTGAACCTCCATGGAGCTCAGCTTTGTTTCCT
GTAGGCCTGATGGAGGCTCT
Chart Advanced