SelenoDB
Release 2.0
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Transcript Report for SPT00000580_2.0
Identity
TranscriptSECIS binding protein 2 (SBP2)
SpeciesCiona savignyi (Sea Squirt)
Transcript IDSPT00000580
Transcript release2.0
External IDNone
Gene SPG00000484_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00000580_2.0 # Transcript # SECIS binding protein 2 (SBP2) # Sea Squirt (Ciona savignyi) # Full length # Forward
AGGCTTTTTCAAAAAGACCCAATGAAAGCTAAGAGAAAGCGCCGACTTGTGATGGGTTTA
CGGGAGGTTACTAAGCATCTGAAAATGAAGAAATTGCGATGTATATTTATTTCCCCCAAC
CTTGAAAAGATACAAGCAAAAGGTAAAAGCTTTAATCTTGGAGGCAGAATTCGTCCTATA
CCAAAATCCTATATTATTTTCAGTGTAATTTTGGCCGAGTGTAATATCTTAGTTCCTGCT
GCAGATCAACAGTTTTAAGTAACATTTCTTTTTCATCTAAATAAACCTAAGATAGTGTGG
ATTTTTGTCTTAGCAAAGTCTTCTTTAATCCTGAAATATTTTTTTAGTTTCCAAAAATAA
GAGTAACTCGGTTGCAAATTAATACCTTATTTTACATTTGTTATCTTGTGATGCAGGTGG
ATTAGATGATGCTCTGCAACAGATCCTCAACCTCTGTGAAGAGCAGAATGTCACCTATGT
CTTTGCACTTGGGAGGAAAGCTCTAGGAAGAGCGGTGTCTAAAATGGTCCCAGTTTCCAT
TGTTGGCGTCTTCGATTACAGTGGTGCAGAGGTACAGTTGTTTCTACTTTCCTGAACCAA
GTTTTAAAAAAAGTTGAATCAAAATTCTTCTCCAATATATTTAACACAATCGGTTTTGTA
ACCCGACAGTACATACCAGTTACTCTTGACGATTGCTTATGTCATTGTCTTACAATTTAA
CTGTTCCATCTTTTTGAATAAGCCTAGTTCCTATCAACCTAGCCTCTTTATTTTACAACT
CGCGTGTTAATATCAACTCACATGGAATAAACAATTAATTTCATGGGTGAAATATTTAAT
ACTGACTGAGTGGATGCTGCTCATTTTTATTTTCAAATACAACAGTTACGCCAAGTCACT
CGTTTGACTCTTCTGATGCGAAGTCAAATGATGTTGAAATAACACTGACTGTTTCACAAT
AGGAGCAATACAAGCAGTTGGTTGAACTAGTCACAGAAGCTCAAGTAAAGTACAAGGAGA
TGGTTTCAATCTACCAACAGGAAGTTATGGAAGCAAACCAACCCGCTCAGGTTTTAAATA
TTGCAGAAACATTACCTTGTACTGCTGTTATACAACATCACAAGAAACCGTGTTACCTTT
TACACCAAGTTCTTATCAGGATATGAATCATAAAAAATACAATGCAGCATAATGTCGTAT
ACACTGAACATGGCAGTTACTTGCTGCAACATATCAGATTTTGATTTGCATATCAATTTT
ATATATTTTACATTCTGTTTAAGGCTTATATATTTTAACAATGCATTTTATTTACTTGTA
ATATAAATTCATACAATTTAATATATAAAAACTTCAAGAAGTGCATTTTCTCATTTTAAA
ATCGCATACAATACAGACCAGTGGTGGTGCATCAAAGAGGTTTGCTCACATGACACATTC
CCGAAATCCATCTGCTGCCAGTTGTGTCTCTTTTGCCAGTTTCATATCAGAACCTATCTC
GGAGATGAATGAA
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