SelenoDB
Release 2.0
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Transcript Report for SPT00000588_2.0
Identity
TranscriptSelenoprotein N (SelN)
SpeciesCiona savignyi (Sea Squirt)
Transcript IDSPT00000588
Transcript release2.0
External IDNone
Gene SPG00000492_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00000588_2.0 # Transcript # Selenoprotein N (SelN) # Sea Squirt (Ciona savignyi) # Full length # Forward
ACTGGGCTTGTGGCTTGGAAGAAACCCAGGAAACCTGAAATCGAACTCTTCGCCAAGGAG
TTTAAAATCTTCCTGCCCCCTAATTCATCCCAAATGATCGGTGACGCATACTGGGTGGTG
GAGAAACCGACCAATATTGAAGAACTGACTGGTAATAGATACAGGTGCATCATAACAACC
CGTGTGTTTGTTTTTCTGCATGAGCCTTTAACACACACTTTCATTGCTATTTTGATATCT
TGCATGTTGAAAGCTTAACTAATGAATGTCCATTGTATCATAATATGTAATGTAGTATAT
GTTGCTAGTACTGTTGAGGCATTGCAAATATCTACGAAATAATTTCACAAATATTTTTTT
TCCACACCTAAAACGCAGTTTTAAAGTTTTGTTAGATATTGCTGTAGTAGAAATTAAAAG
GATATATGGCAGAAGTGTCAAACACAGACAATATGGCCAGATCTGGCTTGCCAACCAAAA
TCTCTGCAGCCCTGAAATAAGGTTGCCTCATTAACATATTTTGGTAATTACATAGCATAC
CATGTACTAGAAGTATATACACCTTAGTTACTTGCAATATCTCTATTTAGTATTTTCGTT
ATGAACTATTAAAACTGTAGTTGGGTTTAATCTTTAAGCTATAGCTAAATATGTGGAAAG
TCTGATAAGAATGCCTTAATTTTGCCAATTTCAACAAACTTTGGGTTGTTTTTTTCCATG
GACAGAGGACAGTAAATGTTGCCCATCTCTGATTTATAAACTATCCAATATTGCATGCTA
CACCATACTGTGGTATTTACACACAACTCCACGCATACATTAAGGTCACCTCTGCCGAAA
ACAAAAGCCGAAAAGCTTCTTCACAAGTTGATGTCCATGTTCCATTCCCGTCCATTCGTC
ACCATGCGATTCTCACCACACGGAGGAGCAGCAGTTATACGAGCACAGAACAGTGTCTAC
CTTGACATTTCATTCAGGTTTTTTTCATAAAACAATGTTTATTTCCACCATAGCAAACAC
CTTTTTTGCCCCCTAACCCCCCATATTGGTGACCAGTCAACTGAACCCTTTACAACTGAG
CCCCTACAACTGAACCCCTTTTAACAGAACCCTTTTAACTAAAAAGATGGTTCAGTTGTA
AAGAGGTTCAATTGAAATGGGTTCAGCTATAAAGGGGTTCAGTTAAAAGGAGTTCAGTTG
TAAGGGGCTTAATTGTAGGGGTTCAGTTGTAAAGGGTTCAGTTGTAAGGGGTTCAGTTGT
AAGGGTTCAGTTGTAAGGGGTTCAGTTGTAAGGGGTTCAGTTGTCATGGAACCCCCCATA
TTACCCCCAGGATTCACAGCGAGTTCCAACTTAACGAACCCCCTAACCCCCCATATTACC
CCCAGGGTTCACAGCGAGTTCCAACTTAACGAGCCCCCTAACCCCCATATTACCCCCAGG
ATCCACAGCGAGTTCCAACTTAACGAGCCCCCTAACCCCCATATTACCCCCAGGATTTAC
AGCGAGTTTCAACTTAACGAGCCCCATATTACCCCCAGGATTCACAGCGAGTTCCAACTT
ATCGAGCCCCCTAAACCCACATATTACCCCCAGGATCCACAAAGAGTTCCAACTTAACGA
GCCCCCTAAGGCCCTAACCCCCCATATTACCCCAGGATCAACAGCGAGTTCCAACTTAAC
GAGCCCCCTAACCCCCCATATTACCCCAGGATCAACAGCGAGTTCCAACTTAACGAGCCC
CCTAACCCCCCATATTACCCCCAGGATTCACAGCGAGTTCCAACTTAACGAGCCCCCTAA
CCCCCCATATTACCCCCAGGATTCACAGCGAGTTCCAACTTAACGAGCCCCCTAACCCCC
CATATTACCCCCAGGATCCACAGCGAGTTCCAACTAAACGAGCCCCCTAACCCCCCATAT
TACCCCCAGGATCCACAGTGAGTTCCAACTTAACGAGCCCCCTAACCCCCCATATTACCC
CCAGGATCCACAGTAAGTTCCAACTTAACGAACCCCCTTAACCCCCCATATGACCCCCGG
GATCGACGGGAAGCTCCAATTTAAGAAGCCCTCAAACCCCCCATTTTAGCCCCGGGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTTGGCCAGAAA
CATAATTAGTAGGCTTTTCACCCTTTCTTTGTTTCAGAAATGCCACATAACTGTTTTACA
TCCCAATGTACCAGTAGTTTTGTTTGGGGTCAAATGAGGTTTTTATTTCAATTACAATTT
TTCTATTTGGGATTTCTTGTGTGATGTATTTCTATTTTTTGTGCGACGTGGGGTATTTCT
GCTGCTAGCTTTCCTATATTATGACCCATGCTACTGGCAGCCGTTAGTAGAATACATGGC
ATTTTTTACACTGTCCTCATGACAGATTAAGTGTGATAATTTTCTGTTTTTCATTGCTGA
TATGTGTTGTTAATTGGAATTTTATTGGTGAGCAACTGTAGTCCTCGCTGCTAGCACTAC
TTGATGTTTTATTTAAGCTGCAATTACTGGAATCTATCCCTGTACATGTAGAAGGCTTAG
CTAAGATTGTCTTCTTACAATGGGTCTCCTATTTTTACAGTCTTTCTTTCTTCGTTTTAA
AAACTTATTTTTTTGTAATTTCTTGTCAATGCCCATCATATAACCTTTTTCTTGTCTTTG
AAACAGTTTAATTTGTCTGTCTTGTTTTATATTTTTTTTTATCTACAGCATTTTAATGTG
CAATATCCAATCGCTGTGCTACTTAAGAATTCTGCTTCCACTTTCGTGCAGAGTGTCACT
GGCCCTATTGCTGTTTTCGGAAAAATAGTTAGAAGTCGCTTGAAAGCATTATGCTTTAAT
GTTGTGGGAATTCTTGCATTGTTAGAACTGCCATTACTATGATGCAACATTGATATATTG
TGGTTTTAGAGTACATTGCATGAGTTCCTGCATAGTGCAAGTTGACCTACATATCACAAT
TTCACAAAACTTTGATATCGTTGAGCACCCTTTAAACATTATTTTAAAAAGAAGAAATTT
GGTCTGAGTGATTATTTTAGTATTTCTAACACAATTTAGGGTTAAGGTTTGAGTTACAAA
AAATTAATTTTTTTGGACCACCCTACCCCCCATATTACCCCCAGGATCCACTGCGAGTTC
CAACTTAACGAGCCCCCTAACCCCCCAGGATCCACAGCGAGTTCCAACTTAACAAGCCCC
CTAACCCCCCATATTACCCCCAGGATTCACAGCGAGTTCCAACTTAACGAGCCCCTAACC
CCCCATATTACCCCCAGGTTCCACAGCGAGTTCCAACTTAACGAGCCCCCTAACCCCCCA
TATTACCCCCAGGTTCCACAGCGAGTTCCAACACAACGAGCCCCCTAACCCCCCATATTA
CCCCCAGGATCCACAGCGAGTTTCAACTTAACGAGCCCCTAACCCCCCATATTACCCCCA
GGTTCCACAGCGAGTTCCAACATAACGAGCCCCCTAACCCCCCATATTACCCCCAGGATC
CACAGCGAGTTCCAGCTTAACGAACCCCCTAACCCCCCATATTACCCCCAGGATTCACAG
TGAGTTCCAACTTAACGAGCTTCCTAACCCCCCATATTACCCCCAGGATTCACAGTGAGT
TCCAACTTAACGAGCCCCCTAACCTTCCATACTGGTTCACACCTGCCCAGTTTGCAGGCA
GCATCACAATTGCAAGGGACGGAAGCCACGTGCGAGACTTCCAACTTTACGTCCCGAACA
CCAAGTAAGTGTTGTGGAATAGTGTATACTATTCTGCTTATGGATGGTATACAGTATGCA
CAATGCATTATAATATGTTGTTGTTTGTTTGCACATGTTTGCATATTGTCTGGGTAGTTA
CTGGTTAGCTCATTCTAAACGGAGCATTCTAAAGGTGGCTGGATCAAAACCAGCCACTAG
CTTATCGGTTGTGTCCTTGGGCAAGGCACTTGGTTGGCATTATGTGAACCCAGTGGATCA
ATTGGTTTTACGGAATCTAAAGTAATGTTTCATTACATAGGACACTGCAATAGGTTGGTA
ACATGACGGTTGGACCGATATAATCTGATATAACATGTTATAAACCAACTCTGTTTTTTC
CAACCCTATAGATAGAACTGAATACTCTAAACTTGAGTCCTAACTTTGTCTATGATGCTC
CCTATTAAGGTGCTTCCCCTACAATATAAGTTTCACCCCAGGAAACTGAACGTGGATATG
GAATGGGAGACGGAAGACCCCAACGCTCCAGATAATCATATGGAGGTCGATATAGGGTAT
CTCCCTTTAATGAGAATCAACCAACGCACACCATCGAGTCCATTGATGTTGGCCAACTCA
GATGGTTCAGCCATTGATAGAAGGTATCATTATCATTTTGACCATATTTAGATTGCTGAT
CTTTATTAGTAAACTTTAAATAAATAGCATTTTGCTGACTTCCGGTTACTTAATTGTCAG
TGACATTTTTATATGGCATGTTTCAAAAAAAAAGTTTTGACATTTTTACTGAATTTCTTC
CCATCTTCAATAAAAACAAGACAACCAATACAATTAATTAAACCTGTATTATGCAGACTT
CCTGGAACTCAACTGTCGGTGATTTTCCAGTGTAATTCACTTACATTGGTTTTATTGTTA
TTAAGTTTTGCCATCATTATGTGTTGCAATGTAGACTGATGGGCACTTCAGATGTAAATG
CCTAACCCACTCACTTTACTTCTTGCCCGTTGATTAACAGCTATTTCCTCCCAAGAACTG
ACCCTTCAAAATTCCCCACATTTGCCCCACCACTATGTCTAGAGATTTGTTTTAACATGA
GAACATATCTAAATTACTCCAGTTTTTTTTCAGTTTCTTTATGTAGGTTAAGAATATTCG
ACATTATTAACAAGATAGGAGGGTAAGAAAAAGATTACAGTCATAAAAACACATCAGTAT
ATAATTGGGAAAAAATATATAGGTATATGGTAGATGTGGTGTCAAAACTTAACAAAGTTA
ATGTGACCCATACTTAGGTAAAAGCCGTCTTTAAGAAACAGAAATCATTGGGTTTAAAAC
AATACCAAAATGATTAAAGTGTCTACTAGTGCGTCCAGGATCAAATAATATTTACACTTA
ACCACAAAGGGAGCTGCGCAGGAAAGGAAAGGACATAGAAGTTGAATTCGATCAAATCGA
ATGGAGCGACTCCATCACAGAACCTTCCGCTGCTTCTCAACTTGAGAAACTTTTCTTTCC
TTTCAAGCAAGTAAGTTTTGTTTTCCATTGTAATTTGGAGGTTAGAATATTCGTGTTTAT
ACTTGTGAATTGGAAAACGCAAGCAGCGATATCACACAGCAGCAATTGAGGGGTTACCTC
GTGCCCACTGTCTGGTTATTACTGTGTGTGATGGAGATATTGCTGCAGTTCTTTGATCAA
TTCACTAACCCACTGGGCCCAGACGACATGAACTAAGTTCCTTGTTAAAAGAAAAAGAAA
CAACCGACAAGCTAATGGCTGGTTTCAAACCCACAACCTTCTGGCTGAGAATAATCAATG
TTGAATAAACTCTGGTGAATAAAATATAAACAACAACTCAAGAAAACAAGATTGTTCATC
AAGATAAGTTGATATTGATTCACCCAGGTTGATTATCTTCCGTTCAACGAAGCGTTTGAC
CGAGCGAAGACAGAGAAGAAGCTCGTCCACCAGGTGTTGCTGTGGGGAGCGTTGGACGAC
CAGTCCTGCTGAGGTTCGGGGCGGACTCTCAGGGAAACTGCCCTCGAGAGCCCGCCCGTT
CTACAACTTCTTCAGGACGATTTTATCAGGTAATTGCTCTTCGTGTATTTACGTTAACCC
CGTATAAATACGGTCATCAGATTGTTTTGTCACGGGTCTAAAAGTACATCGTCGTGGTAA
ACTATGTATTTTTTTATTTTCATATGTATTTTGGTTATTGCTTGTCCTCTTTTGGGGTAT
CGTCTGTTACTTCGTGCACAATGCCCACAGCTGAGTTGCTAAAGCTATTACAGTATGTAG
ATGGTTGGTACATTTGTATCCCTGTCGGTCGAAGCCAGGCTTTTTCCCCAGGTATTTCAG
GACACCTTATGCCCACTGGATTTGCTAGTGCTATTACAGTATGTGAATGTTTGGTTCATT
TGTATTCCTGTTGAAGGAGTCCAGGCTTTATCCACAGGTTTCATAGGACACCTCATGCTC
ACTTTTAAGTTGCATAAGCTATTACATTGTGTAGATGGTTAGTTCATTTATATTCATGTG
TGGAAGCCAGGCTTTCTGTACATACAGGTAATGGTGGACACCTTATAACCACTGTCTACT
TGCTTGAGTTATTATAACAGTATTTAGATGGTTGGTTAATTTATAAAACATTTATAACGG
TCCAACTTCTACACATTGAAAGAACCCTTTCAACAATAGTTATGTTGGTGTATGTGGTGT
GAATCTTAATTTTATGTGTGGAAAAAATAACAGCATATGCATGGTAGCTAGATTAGCCCA
GAGTTGAGTGGCTTGAGTTATTGCTGTTTGCTAAGTTATATGACTTAAGCATTTAAATTG
ACTTGATCCAGCTAATAGCCGTTAAGAACACAACTGCGCAGAAAAAGCTCAGGGTGAAAA
TTGAACGTAAACTTGCCTGATATAATAACCGCCGTCCATACATCTCACAATCCTTCATAA
TTACATGGTTCCCCGTATACTGGCAAACCATGCATGTACCCCCACATTTATACAATGCAC
ACCACAGCACCTGGTCGCTGGTAAAGGACTTGGAGTTGTTGGTCGCCGACAAGGAGTCTG
CCCTCCACACGGAAGCCAAGCTTTCCATGGAGGCATACAAGTTCCCAGTACAGATGATGG
TATTGCGGCCCAAATGGGACTGTGGTAATGCAGATGTTTATATAGTATTTGCTTCATTCT
GCCTTTGCAGAATAGACTTTCGAACCTAGGGGTTGTGTATTCCATAACCAGCAGCGTTTA
TGGGTCAAATAGTAAAGAACCCAACCATGTTTACAATGTAAATAGGGTTAGTTAGGTGCT
CTGTAACCTTTATGTCTATAGTCGAACTGCTGGAGCTAGTACCTCTTATTTTGAACCTAG
GGGTTGTGTATTCCATAACCAGCGGCGTTTGTGGTTTAAATAGTAGAGAACCAAACCATG
TTTACAATGTAAATAGGGTTAGTCAGGTACACTGTAACCTTTATGTCCACAGTCGAACTG
CTGGAGCTAGTACCTCTTATTTCGAACCTAGGGTTTGTGTATTCCATAATAAGCGGCGTT
TATGCTAGTGTTGAAGCACAGAGTAAAGTTGCTGGAGCCATTACTGTATTTAGATAATCA
GATAGACTTTTAATTCGGAATAGATACCACTTCACTTGGTTGGGAGCAATGTAAAGTGGT
TTGCTCAGGTTCACAGTATTCTACTTTATGCACCCAGTGGAGTTACTGGCTCTCTTACAG
TGTAAATAATCAGAAAAGACATCCAATTTGGAAGAGTCATTAGATACCACTGGTTAAAAA
CTAAAAGTGACTTTATCCACAAGTATTGCAGGGCATTTTGTGTCCATTGGTAAGCTGGTG
AAACTATTACAGTGTGCGGGTAATTTAAAGTGAAGCCAGTCAAAGCATTGATCGCAGAAC
AAACCAACTTTAACAGTAACAAACAAACAACTGACCGGGTTATCCATTTCCTCAGATTTC
ATCGCTAAACGCCAATGATTGGTTGGCACAAGCAAACGGGGAACTCCCAGTCGATGATAA
GTGGTGAGTACGTTGTATCTGATGATGTAATGGTAATGGTTTTACCTGAGTGGTCAGTCC
TAGGATAGGATAGGTTTATCCCTGTGAAATTGGAAAACGCAAGGGTCAATAACACACGGG
CAATCTTCACATTACCTTTGCGCCCACCCTTGGATTACTGGAGCTATTGTAGTGGGTTGT
GAATAATTAAGACGTTTATATAATATAGCAGGCAAGGTTCATTGCCCAAGGTCACAACTG
ACTAGCTGGCGACCAGTTTTGAAGCATATATTTCGCTTACGTGCAACCCTTCAGCTAAAA
GATGGTGCACTAACCCACCAAGCTAAGAGTGGATAAATCCCTCAACTTGTTTTTTCTTCT
CCCACCATCACATAAATAACATGCAAAACATAACTAGTATATCCAGTTAGCTCAGTCGGT
TGGAGCGTCTGACACCCAGCCGAAAGGTTTTCGGATGGAAATTGTCGGCTAGTTGTTTGT
TTCTTTGACATTATACTGTCGGCTGAGCCTATAAGAGAATTGACCGAACTAAAACTATAG
AACTGTTTTAATCCATACTCAAAACACTGCAACAGCTTAATTAACCTGACAATGTTCGCG
ACATAATATGCCAATTTCCCATTTGATAAATATTTTCCACAAGGGTGAAACAGGTAACCC
GTAATTTAAAAACATTGCTTAATTCCAGGTTGTCCCTTGGAGCCAAGGATTACCACGGTT
TCCTTCAAAATGCAGTAAACAACGCGACTGGTTCGCTCTAAGCATCGTTTTGTACATTTT
CTATACCTAAGCTTTTTATCCCAATCATGTTAATCGGATTTCGCTCAGTTCGCCACCAGA
CGTTACAAACTACATTATGACGTAACTATCTTAAACCTCAACGGATGGCTACCGACGTCA
CGGGTCACGTGGG
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