SelenoDB
Release 2.0
Chart Advanced
Transcript Report for SPT00001021_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesGadus morhua (Cod)
Transcript IDSPT00001021
Transcript release2.0
External IDNone
Gene SPG00000925_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001021_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Cod (Gadus morhua) # Full length # Forward
ATGAGCACACTATGGATGGGGAACGTGAGTACAACAATCGATTTTAAACTATAAAGTATG
TTTACCGCGTGAAACTTCTAAAGAGTTAGAAAACAAATGGCGTCACCTGGTGCATCATGC
GTTTTGAGGGGAGACAAGGAGAGATCGACAGTACAACTACAGCGACTATGTAACCCCCTA
GATCACTCTTCATCCAAAATAAGTTGTTACCAAGTTTGGTTTTATTCAATGGGTCTTTAA
ATAAATGAAGAGTTGTGCGTCAGTAATGAAGAGTGAGTTGGACTCCCGTGTGGGACTGTT
TATGAACCATGTGTACCATGTCCTCTCAGTTGGAGCCCTACATGGACGATCAATTCGTCA
CCAGCGCCTTCCGCACCCTGGGCGAACAGGTCATCAATGTGAGGATAATTCGAAACAAGA
TGACCGGGTGAGTAGTCCACCAACTGCAGAAATGATGTCAAAGCAGTCCATTCAGTCCTG
ATCTGAAACCAGGTTGTTCCTCGACACAGCGGGGGTCTGGGTTACTGCTTTGTGGAGCTG
ACCGATGAAGCCACAGCGGAGAGATGTCTACGCAAAGTCAATGGAAAAGTCCTTCCAGGA
GCCAACCCGGTAACTATTTAATCACACTGGAGATCAATCACATACTTTCACTTCACATTT
CTACTAGAAGATACTCATGATAAACTAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTCGTACGTACGTACGTACGTAGTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTCCATAGCCCAGGAGATTTAAGCTGAATAGAGCTACTTTTGGTAAACAAGGCGAAAGGT
GAGTGTTGTGCTTTTGTGTGCATGTTTTTTCCACTGCATAATATTGGCAGACCCATGTGT
TGTGTTTCCACTACAGAACAGACCATGAAAGCAGGAGTGCTCTTTGAGAATAAGCCTTTC
CCACTAGTGGAATACAGGGATAATAATGCTATTTTTAAATGCTAGCTACAAACTCACCCC
TTCTATATAGTAAAATAATCTATATCAAAAAGCGAAAAGTGTAAGCCCAGTTTCCAGTAG
GGCACTGGTCAACAGGGAACCCATGTCTTTAGACTCTTCCATAGAGCCATTACTACCATG
TACGTTGTTGCTTCACTCAAGTCAACTTTAAAGTAGAAAGGTAACAATCCGCTGTTGACG
ACCATTGCTTTACCTGGTTTGTGATAACATACTGCCTGTTTTCTCTGTGTGCTGCTGCAG
TCAGAACTTCTCTCTGTTCGTTGGGGATCTGACCCCGGAGGTAGACGACGGCATGCTCTA
CGAATTCTTCTACAACCGCTACCCTTCCTGTCGCGGAGGGAAGGTGGTGCTGGACACCAC
CGGTAACTCCAAGTGAGTCGGGGAGACTGATTGTTGGAGATGGGTGACATGAACTCTTCT
CCCTTTGACGCTATAGTAATTATTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAATGAATTGATATGTTTTTAAGAAGAGATGTATTGT
TTTGATTTGATGGTCTTGCTTCCTATAGATGCCTATTCCAAATATAATTATAAATCTGAC
ATGACCACCTTAAGTGAGCTTGGATCAGCTTACTGAACAGAGGAGAGCAACGGCAAGACA
TTGACAATAAATAAGCAGAAGTGTAGAGTGGATCTGACCTTAGACCAGCACAGAGTTTAT
AACTTTATTGCTGCCGCTGCGTGGGCGCTATGGTAATCGGGGGCGCTGTTCCACTAGACC
AACTGGAGGAACAAGCTGTATTCAAAACTATACAGAGAAATGAGACGATTTGTATGTCAA
ATTTCAGTTAATTTCTTGGTGGTGCTGTGGTGCTGCTATTGTAATTTCTGCTGGTGCTAT
AGCACCAGCAAGCGCCGCCACTGAACTGAACACGACCCTCAGCCTAACGATTTTGCGTGT
CTCTTTTTCCATGGTTTGGTGTTGCGTTATGTGGTCATTTTGGGCCGTCTCTAAATAAAC
CTCTCCTGTTGTTATGTTGATGCTTGAACGTTAAAGGTTGTGATGTCTCTGTTCTGCTTG
GTGTTTCCAGGGGGTGTGGCTTCGTCCAGTTCCCAGACGAGCGGCTGCAGAAGAGGGCGC
TGGACGAGTGCCAGGGCGCCGTGGGTCTCGGGGGCAAGCCGCTCCGCCTCAGCCTCGCCG
CAAACAAGTAGGAACCTCCACTCCTAACAGAGCCCAGGCCTTTAAAGGGGTGGACTGCAG
AAATCCACCCCCTATTTCTGATTATTTTAGCAAGGATAATCAAGGTGTGCATAAGGCGTC
AGAAAATGACGGTTGGTCAAATCTATTGAAGTCTCAGAGAATTCCAGTCCATCGCTTCCT
TTCTGTAACTTCAGGTTGATTCAGTGGGTGCAGTCTTGTGTTCCCTCCTGGCTTTGTAGC
CAAGCTGGTGGCCAATTAATGTCCACCGGCGTGGCCTGTGAGGAAGTAAGAACTACTCAA
TCGCTGAGGGCATTCAGACCAGATAATTTTTTTTATTTTATTTTCAAGACTGAGTATATA
GGCTGATTTCAGATTTGTATTAACATAGTTGGCGACATTTGTTGGGGCCTAGTGGATACA
GCGCTCTCCGGTGTATTATATTGGTATGGGCAGGATTCTGTTAATTTATGATCATGATGC
TTTGGGTGGTTATGATTTGATTTATAATTCTACATCCTGCGACTATGAATACAACCTGGT
CAACAGTGGGCTGACGAACTCCACGGACAATGATGTTCAACTAAACGCTGTCAATGCACT
GAGTGCTGCAGGTTTAAAGGGGGAACATCCCATATTTTAAAATACAAGTGTATGTCTTCA
TATCCCTGTTGTAAAATAATCGGTTCAGATTTACTTGCATGCTTGAGAACGCAAATGCCG
GACCGATGAGGTCAATGGTCCAACAGAGTTGATGTTATTCTCAGGTCACTCATCCCATAT
GAAGGCAAGGCAACTTTAATTTTATAGCACTTTTCATACACAAGGCAGACTTGAAGAGCT
TCACATATAAACATTGTCATACAATAAAATAAAATAATAGATAAATCAAAGAAAACATCT
GCAAAAGATGTGTAAAATGGATAGAAAATAAAGGCAAAGTTAAGCAGTATCCCTTTTATA
GGATGACTTTCATACATGCACTAGGGATCCTTTCCAGAGAGCCGGGTCTAGAGGTGATCC
AGAGTTTCCCTTTCACACATGCGACACACAGCTGGCCATAAGCTGCATCAGACGTGTTCA
CACGTATTGGAGATACTCAGTATACTTTGGGTGAGGGCAGGTGCCTGGGTAGAGCGTGTA
GCAGGCGGGATGTGTCAAAGGAAGTATGCAGCGGAAGTCTGTTTTGTTTACAACACAGCG
AAGAGGGCGAGAGGATCCAACTACGTAGTGCTGACTCTTAATGAAGTGATTAATGATGTA
AATACTGCTTATTTAAGAATCATCTGCCACAAACATTATGATTTAGTGCCTTTTTAGAAG
ACTCTTTTATCCAAAGCGACTTGCAATAAGTACGTTTGTCAAAAGAAAGACAACAGAAGA
GGAGAAAGAAGTTGCAACGAAAATACAGGCGAGAAGAGAAAAGTAACCAGCAGCTAAACT
CTGTGCTCCCATTTTTCGCGCCTGTTGAATGATCGAAAGGTCGTCAACATGTCAGCAACG
TGCCCACTCGCTCGTTGGGAATTCTACGGCTCATAGGTCCTCCAGACTTCCCCCGAGGGC
CTGGCCGGGTAAACTCTGGAGGATTCAGACATCTTCGTTCAGCCGTTCACACATACAGCC
CCTACGGGCGTAATCTGGAGAATGTCGGACTTACAATGCATGTGTGAAAGGGCTGTGAGT
AAATGGCAAGCGCGACTGTTCCCCCTTTAAGTACAACTCAACAATTTTGTCCCTGGTTGT
GACCCACCTCTCCAGGACCAGACATCCTCCCGAGAACAAGTCATGGCAGTCGAACTCTGC
AGCCTACAGACCCAACTACCAGCAGTACGATCCCTACCAACAGCAGGCCCAGTACCCCGG
CTATTACCCCAACTGGGGCTATGACCCCAACGCGGACGGCTACGGATACAATTACAATCA
GTATTACCCACAGACTGCAGCACAACCTCAGGTACCTTCAGAATGACCTTCTGACAGTGG
GAAAATTGTTGTCAACATCTTTCATTGATATGTTAAGCTAGCTCATGCTAACTTTTTTTT
TCTTTTTTTTAAAGGAAACTGAGACTGAGACTGAGGATACCGTGGAAGGTGTGCATTAAG
ATGAAGTTCTTCAAGCAGTGGTTTCTGGTTTTAATTATTTTTAACGTAATTGAAACGCTA
ACAAACCACTCTCCCGGTCACATTTCTTTTGCAGATCCGAACCCAGAGCTGGATGTGTGG
GAGGCCAACAGGAAGTTCATGGAGCTGAGCGAGGAGTTGTACGACGCGCTGATCGACTGT
CACTGGCAGCCGTCTGCCGGCGCCGCAGACCTGGGACTGTCTCTCAGTCTACCAGAGACC
GTGCATTGTTGA
Chart Advanced