SelenoDB
Release 2.0
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Transcript Report for SPT00001113_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesGasterosteus aculeatus (Stickleback)
Transcript IDSPT00001113
Transcript release2.0
External IDNone
Gene SPG00001017_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00001113_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Stickleback (Gasterosteus aculeatus) # Full length # Forward
TTGGACCCGTACATGGACGAGACCTTCATCAAGCAGGCCTTCAGTGCCATGGGAGAATCC
CCTTTTGGAGTCAAGATCATAACTCACCGGATAACTGGGTAGGATATACTGAGCTGCTCA
TGCCACACAGCCAAAGGACTGGTGTACCGTGGCCGGTAGGTTCAGGGAAGCCCTGCAAGT
GGTTACGGAACGTCCTGTTAACCGTAAGCGACACGTGACCGGAGGGGTTGATGCGAGGGC
GCCTGTGTAAGCGGTTCTCTCTCTGTCCTTGTGCGCAGAGGTTCAGCAGGATACTGCTTT
GTGGAGCTGGCAGACGAAGCCAGCGTCGACCGCTGTGTCCAGAGGCTCAACGGGAAACTG
GTGCCTGGATCGAACCCGGTCAGTTCTATGCTGTAATTTCAAAATACTTCCTCATATATT
TCTATATATATATTCAATCCTTACTGCAATATATACAATGATTGTTTCTCAGCAAATATA
CATATACTATTGACAATATAATACTGCCTTCCTTTCTTTCCCAGTATTGGACTGTTATGT
TATCGAGCAGTATTTAATTGTTGATTGGACTGTGGATAGTGGAGCGCCACTAGTCTTGGT
CCTCTTTTTGTTACAACAGTAACTCAATAGTATATGTGGTGTGAGGTTTGCTCTGTTATT
ACACCTGGTTCCTGTTAACACAACACAACCATTTGGCTTCCCCCACAAATTTAAACTGAT
ATTATACTTTGAGGAACTATATTCCCCCTCTGCTGCTGGAATAGCATGTCTAGTTAAAGG
TGCGCTGATGTAAAACAAAAAGGTCACGCCAGCTTGCCGTGTCGAGTTGTGCGCTTTAGC
CGCTTGCTACTGAATTTGAAGCGCTGTGAGCTGGCCAAGCTACTGGGCTCCGCCGTCCAC
CGGCCTGTCCCTGCTGCTGAGAGGCTGCTTGTACACAAATGTACTTTGTTTGAAGCTGGT
GAATAGAGTCTCTGGTAGCAACTAACTGAGGAATGGGCTAAAGGCTGGTCTGGGTGGTGG
AGGTATGTAAACCCAAATAACAACAACCATAATAACGCCACTCTCCATTTGCAGCAATAT
CAGTGCTATACTACACGTGGTTGGTGTTCGAGGTTCGGCTCAGTGTGTGTCTTTTGTCTC
TCCCTGTGCAGCCCCGCAAGTTTAAGCTAAACTATGCCACCTACGGAAAGCGGCCCGAGG
CCGGGTGAGTGATTGGCACGGAACCTTTATGGTACACACACACCCAACATGTGTCTCTGA
ACGAAGAACACGCGAAACACTCATCTCTGTGTCAGTGGGATCAAGTAGCATCGCTTCTCA
GGATTGAGAGTGATGTCATGAAAACTGCATGCTTCCAATGTTTGTTGTTCTCTCAGGCCC
GAGTTCTCTGTGTTTGTGGGCGACTTGGCCTCCGAGGTGGACGACTTCCAACTGCATCAA
GTTTTCAAGAAGTACCTTTCCTGCAAGGGAGCCAAAGTAGTAACGGACCAGTATGGATAC
TCCAGGTACGTCAGCCTATAGAGGTGGACAGCCACGTGGCTCCAGAAATGTTAAATGTAG
CCGTTGTTGGAATATTATTGTCAGAAATACACTATGTAATGTTTTTGTGCTGTAATGATT
ACTTCTATGGACGTTGACCACCAGTTCATCTTGCATTGATATTCAAAACAAAATGGCTTA
AGAAATGTTCACCTGCCGTCTTTTATGCTAAAACTATTGTTTTCCCCATATAGGCTAAGC
AAGAGCAACTCACAATTCAAGTGATGCTACCTCATGTTAAAAGTAAAACAACAAGTTTCA
GTTCTACCATAATAATACCCATTATATTCTGTTTGTCATTATAAGTGGCTTGTGAATACC
AAAGCATGCAGTGTGTCTGTGCGAGAGGACGCCTAACTGTCCTTTGACCTGCAGAGGCTA
TGGCTTCGTCAAGTTCGGGGACGAGGGCGAGCAGAAGAAGGCCATCGAGGAGTGCCAGGG
CACCATGCTGGGGGGCAAGCCGCTCCGACTCAGCATCGCTGTGGCAAAGAGGTGCGGCGA
TGCATCGTGGCTGCATGTCTAGACCTGCTCCACACATTTAATTCTATGCATCCACATAGT
AAGGGAGGAGGAAGTGAAGTGGCACTACACTAATACCTCATTGAACTCCAGAAGTGTCCA
TCAGACAGAGCAGAGAACATGACGGAAGCTTCAAATGTGCTCCCCAAAGCCAGCTGTGAA
TAAACCTTCCGTTTTTTAGATTTGTCTTGTTTTCTATCCGCATGTTTTCCAGATATTGAG
ACTCATACACTTGACACCAATTGGCTCCCTGATGCACAACCTTTGATTTGAATCTGTTTT
ATTTCTTGTGTTGCAGCCAGAAGATGAGCAACTACCACGGGGGCCAGGGCCAGAATTACC
ACAGCAACTACAACCAGTCCCAGTCCAGTTACTACGGCAACCAGGGCAACGGGAGTCAGG
GGGCTTACTACCCTCAGTGGGGCGGCTACGACCAGTACGGCGGCTACAACAGCGGCTATG
GCAGCGCCTACGGCAGTGGCTACAACTACGGCCCCTATGGGTACCCCCCACCAGGCAACG
CGGTGCCTCCACCCCCCATGGGAATGCCTCCCACTGACATGTCGGGTGCTACGGAGGTGA
GTCGACACTATGGGACCAATGCCTACGCGGCGTAGAGAGATTGTTTCAGGGTGTTGAAGG
CGAGTGCAGCGTTTTTACAAACAAAGGCTCTGTCTGATCTGCCTCTAGTGGAGCTCAATG
ACAGTATAACCGTCATGTCTACGTTCTGTAAAGGGAGTGGCCATATTGCTACACACACGC
GGTGGAACCGTTTATTACATTTAGCTGACGCTTTTATCCAAAGCGACTTACACTGGATGT
TCACACTGTTTATGACTGGTGTGTTTGCCTCTTTGGTTTTGTGCTTTGCTTGACTGGGTG
TTGTATACAAACATCCCTGTTTCCGAATGAATGCTCAGTGTTTCATGTCTCCTCCAGCAG
AATCAAGACGAGGGAGCTGAGGTAGACGAGGACAATTCAGAAGGTAAGACGCTTTCTTAT
AACCCCAAACATCCCCATTTGTATGACGCTGGTTTCCTTCGTATGAAGCCCAACTGGATC
TTCCATCGGATTTCGGAGTATTGCTGGAAATGAGCTCTGTGGCAAACAAACGGGTTGGAA
TACTTACACATTTAGTTCATATAGTCTCCACTTGCAAACTCTCTGGTTTTTGAAGCGTAA
ACGCAGTCTGCAGAAGTAAAGTGTTAAGGTTAGTCAATAAACACAAAGTACACCAGATAT
TTAACACATCACAGCACCACCGTGATCTCCAGAAACAAGTGTTTGACATGGACACCTTTG
GGAGTCTCATTCCTCACATGGCGCAAACGTCAATCATCAATCATTTATTGACTTGAGACG
AGGGGACAGGAAGTGAAAACATGCTCCTCATTCATTCGTCATTCGTTGCTCTGTTATACT
GGTCATGCTGATCACCATGCCTTCGGTCTATTCCATATCTAATGGTAGTAAATACCTCTC
AGGGGGTCTTGTGAATCTTCAGGGTGGTCCGGGGCCACAAAGGGGCCTATTAATGCACCG
AGTGTTAAAACTATTTACGTTGCTATTGCTTCTGACAGCTCGGTGGTGTTTTACAGAACC
CATCCCCGAGTGTGACGTGGAGCAGTGGAACAAAGACTTCATGCAGCGGAGCGAGGAGCT
CTACGACGCCATGATGAGCTGCCACTGGGAACCGCTGGACTCTGTTAACTCCCCCATCCC
CTCCCTCTCC
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