SelenoDB
Release 2.0
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Transcript Report for SPT00001114_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesGasterosteus aculeatus (Stickleback)
Transcript IDSPT00001114
Transcript release2.0
External IDNone
Gene SPG00001018_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001114_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Stickleback (Gasterosteus aculeatus) # Full length # Forward
ATGAGTACGCTATGGATGGGGAACGTGAGTACTGAACAACGTTCAATGGACGAATCCTGC
CAACAACGTGTTGGCTGACGCCGCCGCGACTTGCGCCTCATGCGTTGTGGAAATCGGTTC
GGATTCAAAACTCCGAACGCTGAAAGCGGCGCTGTAATATTAGTAGTTAGTCCTGTTCGG
TGTTCACTGTAGGTTAACCGGCACACTGCAATGTAAACCGTACGGCGATCCGGTTCATGA
GGGGCCGAACCAGGACTCTGTGTCTATGAGGGGCCGAACCAGGACTCTGTGTTTATGTGG
GGCCGAACCAGGACTCTGTGTTTATGTGGGGCCGAACCAGGACTCTGTGTTTATGAGGGG
CCGAACCAGGACTCTGTGTCTATGTGGGGCCAAACCAGGACTCTGTGTTTATGAGGGGCC
GAACCAGGACTCTGTGTCTATGTGGGGCCAAACCAGGACTCTGTGTTTATGAGGGGCCGA
ACCAGGACTCTGTGTTTATGAGGGGCCGAACCAGGACTCTGTGTTTATGAGGGGCCAAAC
CAGGACTCTGTGTTTATGAGGGGCCGAACCAGGACTCTGTGTTTATGAGGGGCCGAACCA
GGACTCTGTGTCTACGAGGGGCCGAACCAGGACTCTGTGTTTATGAGGGGCCGAACCAGG
ACTCTGTGTCTATGTGGGGCCGAACCAGGACTCTGTGTCTATGAGGGGCCGAACCAGGAC
TCTGTGTTCATGAGGGGCCGAACCAGGACTCTGTGTTTATGAGGGGCCGAACCAGGACTC
TGTGTTCATGAGGGGCCGAACCAGGACTCTGTGTCTATGTGGGGCCGAACCAGGATAAGT
CTGAATGTGTCTCTGCCCACTCTGAGCTACTTGTGTTGTGTGTTTATAACATTTTACAAC
AGTTATTAACCCACAACAAAGGCTCTTTAACAGGATAAAACACCACGACACAAACGTTTG
CGACACATAAACAATGTTTAACACCATTAGTTGCATATTTATAAAATGCCCCCGCCGAAC
TGCATGCTGGGTACAGCACCATCACAACGTGTGCCCAACGGAGGAGCTGCGTCTGTTTGG
AGGGTTTGTGGTTTGGAAAAGTCCTTCGTAAGTCCAATCAGAGAAGGCTTTACTGGTCGA
GCCGCTGGTATTCCCTCTGGTGGCCACATAGCGGCTAACCGGCTGACCTCGCCGGCCAGC
GGTCCTTTTCGGGGTCCATGAAAGAATGTGTTCACTTGGAATATGCTACTGCCCAGTCCT
ACTTTGAACCCATTTTTAGCTTTGAGAACTCTGCTTTTCATATAGATATCTGGATAGTGG
ACAACGATGAGCCGCCGTGTTCAGTTTTTACACTTGCCGAATACAGAATTAAAATCAGCG
TTAACAGTATTCAGGGTGTCCCACAGTGTCTGACAACTGAATGTATGAATGGGAACCATC
GCTGAATGCTTCTTAAGCCGCCTCTTATCTGGTGGTCTGTAGCTGGAGACCTACATGGAT
GAGAAGTTCATCACCAGGTCCTTCTCCACCATGGGGGAGCAGGTGGTTAATGTGCGGATC
ATACGCAACAAGATGACCGGGTAAGGATTAAATCCACAAGCGATTGTCTGTTTTAGACCT
GATCTATGCTGACGTTAAACAGTTTGTCATCACCCAGGGGGGCCCTGGGCTACTGTTTTG
TTGAGATGACCGATGAGGCCACAGCAGAAAGATGTCTCCGCAAAATCAACGGAAAAGCCT
TGCCAGGAGCCAACCCGGTATGGATGTTCAGACAGTAACTTTTAAAATATTATCCCCGTT
GTCCTGAGAAATAGCATTTGTTTTTGTTTTTCCCACAGCCCACAAGATTCAAATTAAACC
GAGCCACCTTTGGGAAACAGGAAAGCGGGTAAGTGAATATGGAGAGCCAAGAGGTCTTTT
TATATAAAGGACAGCATCTGTATTTTTCAACCAGGACCAACTTTCATGTTTTTGAGTCTG
ACTAATGGAGAGCAATTTCTGCAGTTGGTCTGGTGTAGAGGGAGAGCAGCCAATTATGAC
CTGACCCCACAGTGGTCACGCGTTGCCAAAAGACAACCACATCAAAAATAATCTATGATA
ATTTTGGCCATTATGTGGAACTCTTAGTTAACATATTTGTTTTCCCAGGGTTTGGTCATG
GAAAACCAGGAAAAGTCACATTTTAAAATGGTCATTTCCAGGCCTGGAAAAGTAATGGAA
AAAGTCGAACCCCAAAAGGTTTGGAAAAGTAATGGAAATCTGTTATGTTCATGCGGTTCA
TTTAAGATACGTTTGAAATAATTCATATGGTTATAAAAGAGACGTTCAAAATACAAGCAG
GACGCTCTCCTATTCGCAGCACAAATAAATCTCACCATGTTTGCTGCTAGCGAAGCTACT
AGAGGAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGTCTGCTAGTGAAGCTACTACAGGAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACT
ACACCAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGGCGGCTGCTAGCGAAGCTACT
ACACCAACCCCATCAGAGGGCGGCTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGGCGGCTGCTAGCGAAGCTACT
ACACCAACCCCATCAGAGGGCGGCTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGGCTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGGCGGCTGCTAGCGAAGCTACT
ACACCAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACT
ACACCAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGGCTGCTAGTGAAGCTACTACACCAACCCCATCAGAGGGCGGCTGCTAGTGAAGCTACT
ACACCAACCCCATCAGAGGGCGACTGCTAGCGAAGCTACTACACCAACCCCATCAGAGGG
CGACTGCTAGTGAAGCTACTACAGGAACCCCACTACGCTGAGCAGAAGGGGTCGCTCTCT
CTCTCCGGCCATCGGCTCTGGACGCGACGCGTCATTTTCCAACTAGTGCTATTAAAGATT
CCCAAGTAATACATACGTAGTCTCTGGTTATAGCCAGTGTAACTGTTTCTATATGGTCCA
TAATTTGAATTGTAAATTCTTTAGGCACCCGTATGTTTAAGTCTTGTTTTAGCACTGGCA
TCAGGAAAACCCCAAATGATACTCCTCCATAGTGGATAATTGTAAACATAAAAACAGACT
TTCTTGGACTAATTGAGGGGAAACACTGTATGATGGTATTCTCATTGTTCGTTTAAATAC
ATTTTCTCACTCCTGTATACAGAGATTTCACAAACCTTTTGGTCATGGAAATCCACTGGT
CAAAATGTATGAACCCAGTTTTACGATTTGTGTGAAGGCTGCCGATTCAGTCACTGAAGC
ATAAACATGAGGAGGACCCACTTGTAATATACTGGCTGTGCCCTGTAACAGGAGTGCGTA
GTGTCATTGACACATTTTTCTTTCTTCTTCCTGTAGACAGATGTATTCTCTATTTGTAGG
AGATCTAACGCCAGAGGTGGATGATGGAATGCTTTACGAGTTCTTTTACAACCGCTACCC
TTCCTGTAGAGGTGGGAAAGTGGTGCTGGACAGCATGGGGAACTCCAAGTGAGTATTAGA
ACGTACCACTCAATATGGAGAAATGTTTGTGTACGTTGTTGGCCTGCATCGGTGCAGGTT
TGTGTGGTGCTGCTCATTTAGCCTTACAACATAATTGGGGGGGGGGGGGGGGGCGCCTCC
ATTTTTATGACCATATAATCTGGTGTCACCCATAAACCGCCTTTCTCCCGAAAAAAAGCC
CCTTCTTGGTGGAAAAAGAAGGTCCAAAATCTATCCTGCAGTAGGCCACACAGTGGATGT
CATGAATCCCAGCAGCAGTTAGTGTCAAAACCAATGACAAGATTCATGAGGTCACTTGAG
AATCCTTGCATTACTCAAGCTCACTATGGCCTTTTCTTTTAATGTCGGTTGGACTATAAT
ACCCTGCATCCTATACAAATGGAGGTCAGCTATGCTATGTCTCTGTAGGGGCTGTGGCTT
TGTTCAATTCCCAGACGAGCGCCTCCAGAAGCGTGCACTGGAGGACTGTCAGGGCGCTGT
GGGACTGGGGGGTAAACCTCTACGATTAAGCCTGGCTGCTAACAAGTGAGTTAATCTGCT
CAACTCTTTGAATTGGGCCTGAAGAGCACAAGCCAAATGACTGCCTCTCCCTACCTCTTG
AGTTTAAGGAACCGACCGCAGCCGTCAGAGCACAGATCGTGGCAGTCCAGCTCCGGATAC
AAGCCCAGCTATGACCAGTACAACCAGTACCAGCAGCAGGCTTATCCTGGCTACTACCCC
TCTTGGGGCTATGATCAGACTGGAGGAGGGTACGGCTACAACTACCAGCAGTACGATTAC
GCGCAGTATCCCCCACCACAGGTAAGTTAGAACCCCGGTCAGCCCGTCGTCATTCACACG
TGACTCTCTGACACGTGTTCTTCTTCTTCTAGGAAAGTGAGGCTGTTCCGGATGACGGAC
TTGAAGGTAAACAAATTCCCCCTCTTCCATTGACTCCTGTGACAGTTTTCATTTGTTTTG
TCTCTTTACTCTTCAGATGTTTGTTCTCAACGGTGTTTATTGTGTCATTTAAATCCGACC
TGAATCTGAACATTTAATCGGGATCTAGGATTTCTATCAGTTCTGTGTAGCTTTTTGTAA
GTAACCGCCTGTGTTGCAGATCCCAGTCCAGAGCTGGATGTGGTGGAGGCCAACAGGAAG
TTCATGGAGCTCAGTGAAGAACTGTATGATGCCCTGATCGAGTGTCATTGGCAGCCAGCA
GAGGCGTCTACAGAGCAGGACTACATGACCTCCAGCCTCCCAGAACCGGTCTACTGCTGA
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