SelenoDB
Release 2.0
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Transcript Report for SPT00001973_2.0
Identity
TranscriptSelenoprotein J (SelJ)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001973
Transcript release2.0
External IDNone
Gene SPG00001879_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001973_2.0 # Transcript # Selenoprotein J (SelJ) # Medaka (Oryzias latipes) # Full length # Forward
ATGGCCTCAGCTGTGGCTGACAGGGCAATAGGAGCCATTGTTGGATCAGCTGTTGCAGAT
GCTGCAGGTAATTTTTTTGACTGGTTATCATTTTGTTTATTCTGCATCTAATTCAGTCGG
ATAACATTTTTTAAACACCCCCTCGAAGGAAAATTGGGTTTATTGTGTCTACTACTCCAA
GGCAAATGTTTAATGAGCTCCAGCCGCTCTGCAGAAACGATGTTCTAGGAAACGACCCAG
GTTTTTTGGGTTGTTTTGGCTAAAATCGACATAATCATAACTAAAATACCATTGGGAATG
GTTTTACAATAGATCAAAAGATGGTCGGAGTTGGACTTGTGTCATTATTTTTCAAAGGAT
CCTGCATACCTTTTACCACATCAGTATTTGCTCTTGAACAGCTTGTTCACATTTCTATCA
CATTTCCCCCAATAACCCAATCAAACAAGTAATTATTACCTGTAAAGATCTTCGTCTGAA
CTAAAAAAAAAAACTGACTGGATGATGTATTTACAGCACAGCCTCTGCACTGGGTCTATG
ACCTGCAGAAGCTGAAGGGGATACTGGCTCAGGATTCAAACCCAGAGTTCCGTTCTGAGT
CTGCCAACCCTTTTTACCGAAGGAAGACGGGCGAGCAGAGTTGCTACGGAGACCAGGCTT
ATGTGCTGCTGGAAAGCTTGTCTGAATGTGGAGGTGAGCCAGTCTCTCCTAATATCTGTA
TTTGGACCCAACAAAGTGGTAGATTTTTAACACAAAGATGCTCCGCAAAACAACTAAATG
AGATTTTTATCGCCCCAGTCATGTGGCATTGATCAACCAAATTTTAATCAATTAACAAAT
TATGAATTTGAGGATATTTTATATTTTATGTCATTTTAACTCCCGTCATGATTCATTGAT
CACTGTCGTCTTCTAGGTCTAAACGTTGAACATCTAAAGCAGCGCACAATGAAGTTCTTT
GGACCGGGTTCAGAGTACGACACACCCATCAATGATCCGTACAGAGACAAAACCGGTACG
GATCTTTTCAGCTCCTCTGGAGTGAAATGCTGCATTTACTATTATGGTATTCCCTTAAGG
AGAAAATCTTTGTACTCATAGAATGTTTGTTTTTAAATTCATCAGGGCCGAGACCTCAGC
TGCCCATTGAGGGACCATGGAGGCAGGCATGTTTGAAGAGTTTCATAAAGAATATGGATG
CTGGAAAAGAGGAAACAGGTTATTCCAAAAATAAATTAATAAAATAAAACAGTTTGCTGC
TATTAAAACAAACAAACTTGACGTGTCTTCTCTGTTGCAGGCTGTGAGACGGATTGTCAG
ATCGACGGTGTAGCCAAGCTGGCTCCTGTTGTGGCTTTCTATGCAGGGCAGCCTGACATG
TTGGAGAAGGTCGAACAGGCCGTCCGCGTCACTCAGAACAGCGACGAATGTGTTGCAGAA
ACTTTGGGGGCAGCAAGGTTTTTAACATGTTTCTTCTCCTGGTGGCACTAATGAAATGGG
ATAGATCCTTATATTATTATCTATCTTTTTTCAGTGCCACTCTTGATGATGTAAACTTAT
CCCACTTATCCTCAAATTTAGATTTAATAAAGAGCTACAATAAAAATAAATACATAAAAT
AAAATCCCCCAATTCATTTCTTGAGGTTTCTGGAACATTTCATCTTGAACGGTGCTGATC
CGGGAGCCCTGGAGGCAGTGCTGAATCAGCTGAATGATCTGAAGAGAAAGCAGCCTCAGG
ATTTGGATAAAGCGGTGGTCGGTATGTGAGATCAACTGCTGCTTTGTTACTGATAAAGTC
ATGAGATTGGGTCATGCTGTTATCCGTCATGTCCTGTTGTTATTTCAGGCCACATTCATC
AGGTGAAAGAGCATTTATCAAAGACTCCCCAGGAGATTATCCCCACAGTGTTCCCAAACA
CATGAGGTACTTTGACAGTTTAAGCGTCTCTGGTGACAGAAAATCTTAATTCTTTGAACT
TCGGCTCAAATAATTATGAATTATTGCATTTATTATTATTTTTTTAGGTCTGCCAGGTGC
ATTCCAGGCAGCGCTGCACGGAGTCCTAACGGCCAAGAACTTTGAGACGGCTGTCAGAGA
CACCATGAGCTGCGGTGGGTGCACCTGCAGTCGAGGGTCCTTCATCGGAGCATGTTTGGG
GGCTCAGGTCAGATCATTTGCCTAATTTAGCCACTATTCCGTTACAAGTCAGTGCTGTTG
GTGTAATTCATGGCATTTGCTAATTCTAGGTTGGTCTTGAGGGAATCCCAGCATCTTGGA
GGGAAAAAACCCTGAGATACAACTCTGTGTTGGAGCACGCCAAGAAGATTACCAAACATC
TTTAGTCATATGAGAAGAGTGAGGCACTGAGAGCATCATAGAAGATTGCTGAGCTTTGGC
AGAGCATCGAATGAAGGCTTTTGTCTAAACTTATGTGAGGCAGAAGCCTGATGTTTTTTT
ATGTCTGCA
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