SelenoDB
Release 2.0
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Transcript Report for SPT00001978_2.0
Identity
TranscriptSelenoprotein O (SelO)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00001978
Transcript release2.0
External IDNone
Gene SPG00001884_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00001978_2.0 # Transcript # Selenoprotein O (SelO) # Medaka (Oryzias latipes) # Full length # Forward
ATGGCTTATCTAGGACGTCGGCTGGGACAGTCACGCGGGTTTTCTCCTCTCGTGTCCTCC
GTCAGACTCCTCGGCATGGACGGCATGGGTTCCGCCGCCAGCCAGTCTCCGTTGGAGCGA
CTCAACTTTGAAAACGTCGTCCTGAAGAAGCTTCCGGTGGATCCGTCCGAGGAGTCCGGC
GTCCGGCAGGTCAGAGGAGCCTGTTTCTCCCGGGTGAAGCCTCAGCCGCTGACCAACCCG
CGCTTCGTGGCGGTCTCAGGGGAAGCCCTCTCGTTGCTGGGGCTCCGCGGACGGGAGGTC
CTGAGCGACCCCCTCGGTCCGGATTACCTGAGCGGGTCTCGGGTCATGCCCGGATCCGAA
CCCGCGGCTCACTGCTACTGCGGCCACCAGTTCGGGCAGTTCGCCGGGCAGCTGGGAGAC
GGAGCGGCATGTTACCTGGGAGAGGTGAGGGCGCCTCCGGGCCAAGATCCCGAGATGCTC
CGCGAAAACCCGAGCGGGCGCTGGGAGATCCAGGTGAAGGGGGCGGGACTGACCCCCTAC
TCCAGGTAACCCGGTCCTGTAGAATGGAAGTAACCTTTAAATAAGAAAAAGATCAAACTG
ACTGTTTTCTGTGGAACAAAAACAGAAATCAGGGTACGTCCGTGACGTCACTTTTCCTCC
TTCTCCTTCCCAGACAGGCGGACGGCAGGAAGGTGTTGCGCTCCAGCATCAGAGAGTTCC
TGTGCAGCGAGGCCATGTTCTTCCTGGGTGTTCCCACCACCAGAGCCGGATCCGTGGTGA
CCTCCGACAGCAGGGTGGTCCGGGACGTGTTCTACAGCGGGCGCCCCCGCCACGAGCGAT
GCTCGGTGGTCCTCCGCATCGCGCCTACCTTCCTCAGGTGAGTGTGGGCGGTTCCACCTT
CCTCCTGAGATCTTCAGAGTTCTCTTATCGCTTCTCGTTCGGAAAGGTTTGGCTCTTTTG
AGATCTTCAAGCCCGCTGACGAGTTCACGGGCCGGCAGGGTCCCAGCTACGGCCACGAGG
AGATCCGAGGTCAGATGATGGATTATGTCATCGGGACGTTCTACCCCGAGATCCAGCAGA
ACCACGGCGACCGCGTGGAGCGGAACGTGGCTTTCTTCAGAGAGGTGTGTTCAGAGTGCG
GAGGACCCTCTGAGGGTTTCAGAGTGAGGCTGACGCTGCGCTGGTCCTGCCTGCAGGTGA
TGCGCCGCACGGCCCGGCTGGTGGCCCAGTGGCAGTGCGTGGGCTTCTGCCACGGCGTCC
TGAACACGGACAACATGAGCATCCTGGGACTCACGCTGGACTACGGCCCCTTCGGCTTCA
TGGACAGGTCGGCTGCATCCCGTGTTTGGAAGCTTTCAGAAGCTGCCGTCAGAAAACACT
TTTGTCTTCTTCTCAGGTTCGATCCAAATTTCATTTGCAACGCGTCCGACAGCTCCGGGC
GGTACTCCTACCAGGCGCAGCCGGCCATCTGCAGGTGGAACCTGGTGAAGCTGGCAGAGG
CCCTCGCTCCAGAGGTACCTCCTGACCGGGCCGAAGCCGTCATGGACGAGTACCTGGACG
CCTTTAACAGCTTCTACCTGGCAAACATGAGGAAGAAGCTGGGCCTGCTGAAGAAAGAGG
AGCCTGAGGACGCCATGCTGATCACAGAGCTGCTGCAGGCGATGCACAACACAGGTGAGG
TGTCGGCGCCGCATGGCTGTCCTGCAGCGTTCTGCGGCTCAGCTTTCCTTTTCCTGCAGG
CGCAGACTTCACCAACACCTTCCGCAGCTTAAGTCGGATCTCGTGTCCCGCTGAGGGTGA
AGATGAGGAGGAGGCTGTCAGAAGAGCCACGGACCTCCTTCTAGAGCAGTGCTCCTCCTT
GGAGGAGCTCAAAGCTGCCAACAAACCCACTATGGATCCACGGTGAGTCAAACGGAGCCT
CTGGGCATAAAAACACTTATTCTGCTCGTTAAAAAGTTACCTGTTATGTTTACAATCTAA
TACATTACAAACAAGAAAAGGACATTTAAAAAAGATTTATTTTTTTTATTATTTCACAAA
ATTGATCTTTTCATAGTAAAAGCTGCAGATGCTGATTGGATAACAGGTTACCTGTAGTTT
CAACAGTCACCTCCAGGTGGCACTAGTTACATGTTGACATCCTCCTACCAACGATGCACA
TTTGTCTTCAGTAAAGGACATTTCTCAACCTGAATATCTGCCAACTACTGCAGGCTACTA
AATGAAGTCCTTTTGGTTTCTACAGAGGATATTTGGAGCTTTTTATGACAACAGATATAA
AGGGGCGGGGCTCTGGGGATTCTCGTTTTGGGTGGATTTTTTCAGGTTTTCAGGAGACTA
GTTGATTTGATGCAGCCTAATCCTTACTCCAACATTACATAGCCCATTTATTATTGTTTA
TTATGAAAAGCTGATTTTAAAATAAATCAGAATAACATTTTTAATTAGATTGATCAATTT
AGATGACTATGTAAGATTACAACATGATAAAATTGTTTCCCATTTTTCTGTGGACAGCAT
CTTAAAGTTTCCCTCCTCTGAGGTGTTCCTATTTATTTACTAGTTACGACGATGACGTTT
TTATCCAAAATCTAAAAACCTGTGTAGTTTTCTAGGACATTGTTTCTGCAGAGCGGCAGG
AGTTTATCATAAATTCACCTCTGAGTTCTGGGTAGGACTGTAAGCGCGGAGCAACCCCGC
CCCCCTTTTTCCCTCCCCATTGCAGAGTGGAGCAGAGCTTCTGGCCCCGCCCAGCTTATT
GTCTATACGTCACAATGCCATCTTTTACAAACGACATTTTTCTCATTTGCTCCTGATTTA
CGGCGATTTGAATAAAGAAATTCTCAGAAATGCCGTTTTAAGCTTAATTTTCTTTATGTC
TCCTCCATCATCAGATGAATGCTTTTGAAAACACCAAAAAACACAGTTTTCATCAGAGTC
TTTAAATCGGACTGGTGTGTTTATAGTTGCCATGGCAACACTGTGCGTTCTGTTTTAAAT
GACTGACCTCAGGCCAGTCCAGAAAAAATGAGGCACATTCGCCGCTCCATCCACGGTTAG
AGGATGTTTGATTGGCATTTCTGCATGTCAATTAAGTGACGCGCCTCACTGGAAGGAGGA
CGATTGGTTGACAGATATTTTCAGAAGCGGATCTATATTTCATTTACTTTTAATGATCAC
TTCCTTGGTGATCGACGTATTGGATGAAGCACCTGTAAATGCGATTGTCCCAGCGTGTGT
AGCTCAGAGCCAGAACTGAACCGTGTTTTTCTGCGGACAGCGAGCTGGCGATGCTGCTCT
CCATGGCTCAGAGCAACCCGGCGCTCTTCCAGATGATCTCTGACAGGGCGACCATCGCGC
GGCAGCTGGAGAAACTCGGCAGGCTGAAGGAGCTGATGGAGACCAGCCAGGAGCAGCTGA
GGAGCCAGCAGGCGGAGGAGTGGACCTCCTGGATCCGACTCTACAGGTGAGACGGTTCGA
TCCTGGGGGGTGGAGGTGTGGGGGGGGTGGAAGTCCAATCCTGACTGTTGAGGGTTTCAT
CACAACCACAGGAAACGTCTGGCTCTGGAGCTGGAGGGTCAGAGCGATGAGCAGGCAGTC
CAGGAGGAGAGAGCGAGGGTGATGGACGGCACCAACCCCCGCGTGGTGCTCAGGAACTAC
ATTGCCCAGAATGCAATAGAGGCTGCAGAAAAAGGAGATTTCTCTGAGGTCAGAGTGCGT
AGCTTGTTGAAATGTGACGTGATCTGATGCCAAACCCTCATGTGAACATTTCAGCTCTTC
TCTTCTCCTGCAGGTCCAAAGGGTCCTCAGGGTTCTGGAGAAACCGTTCTCCTCTCAGCC
GGGTCTGGAGCTGCCTGCGTGGGTGCACGGAGGTGGGGCCGCCGCTCAGGCAGAAAGGGA
TGAAGAGGAGCAGCAAGAGGAGCCTTCCTCAATGGGAAGAAACCCTGTTCCCTACGACAG
CAAGCCCCCATCCTGGGCGCAGGAAATCTGCGTCACATGATCTTCATAA
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