SelenoDB
Release 2.0
Chart Advanced
Transcript Report for SPT00002001_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesOryzias latipes (Medaka)
Transcript IDSPT00002001
Transcript release2.0
External IDNone
Gene SPG00001907_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00002001_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Medaka (Oryzias latipes) # Full length # Forward
ATGAGCACGCTGTGGATGGGAAACGTGAGTTTCACCACAGTCCGCATCTTTAATGAGGGA
ACGGCGGCCGGAAGTCCACGCTTCCTTTACGTCGCGTTTGTTTAAGTTTGGATAATTCTG
TTTTTAAACTTAATCCAGCTAATAGGCTCATTCTTAATATGCAGAAATACCCTCTCCTCT
TAGTGTTGTTTTGTCGTGCATTATACATTATATCTTAACGAGTTCTCGCTGTTTGTTAGC
ATTAAAACAGCGAACTGAATCACCGTGTTATTAGCTAAAAAATGCTATCATGAGTCATGA
CGGACGTTCATGGCTTATATTATTTTCATGGGTTTCTACGCATTAGACCCAGTCGGGCCT
AGCAATAGTTCTAATGTCTAAAGTCCTTTTTTTAACAATGTTTTTAAATGGGAACAGAAA
CATGAATCCTGGACTTCTCTTGTCTTGAAGATTCCTGAATGTCTTCTGTCTTCTGCAGCT
GGACTCCTACATGGACGAGAAGTTCATCACCAGAGCGTTCTCCACTATGGGGGAGCAGGT
GGTCAACGTACGGATCATACGAAACAAGATGACGGGGTAAGGCCTGAGGATGCTCTAGTG
CAGGGGTCGGGAACCTTTTTGGCCGAGAGAGCCATAAACGCCACATATTTTGAAATGTAA
TTTCGAAAGAGCCATACAATAATGTAGTGTCCCTTTCCCACACTGAGGCACGGAAACCCT
ACCCTTTTTTAAGGTTCTTTATTCTGGTTACTGCAGACCGCAACAAACGCCGTACAATTA
ATTCAGCAACTCCTGAATCTCTCCCGCTGAGACGAGAGCAGTGTTGCCAGATCTGAGTGA
CAGTTTCCAGCCCAAACTCATCGTAAAACCCGCCCACCTCAATAAAAACCAGCCCAAATC
TCAACCTAGCAAAAACCTAATGTTGAACGTAAAAGTATAGCAGTAGCCTAATAAAAAATG
ATGCAATAATAATAAATTATTATATAATAAGTCTGTTATAATAAAATTTTTTATAAAATA
AGTACAGAAAATCCAGTTATAGGTTTCTCGTATCGTGTACTCTAGATGGCTTTTGATGGC
GCCCCCCTCTTTCTGCCACTGCCAGGTGCTGGACCACAGCGTATGTCAATCAGCGGTGGG
CTGGTGACTGGTGGATTAGAGGGGGCGGGGCCTACCTGGGTGCGCGTTGGCTGAACGTTC
TCCTCCGGCTGAGTGTATAAGCAGGCTGCGTTATTTTTGTTCGAGCTGTAACCATTCTGA
CAAGGTTAATAAAAGCCAATAAAAGCCCTGCATCATCTCCATCTTTTGGAAATGAACCCA
AACGGCAGATATATTAATTAGTATACTTTTAATTAATATTTTAAATAATAAGAAAAATAA
TAATAATGACAGTAAAACCGCTAAATATTTTGAAAAGCAGCCCAAATTTTATAGACCCGC
CCAATGCCAATTTTACCCGCCCAACATAACCAAAAGAAGCCCAATTGGGCGGAAACCCGC
CCAATCTGGCAACACTGGACGAGAGCGCGTCTCCCAACTTTATATTCCCCTGCACCCGCT
CCAGCCCTCCCATTTTCCTTATTCGGCCCATAGCTGAACCCCATTGGTCCAAATTACCTA
ACAACAGGCTGAGCGACAGAACTGAGAGCCAATCAGATCTCTGCTTGATGCGTTCATTGA
ACTCCAGAACTTTTAACGCGGCCCAACAGCCAAGTTAAACTCAGTCCGCAACAATATGTT
TAAAACTAATTATACAAGTGAATGTGTGCTTTGATGTAATTTCAACATTTTTAAAGTACA
ATAAGTCTGTGGATTCTTTTTTATAACATTGTTATGCTGTTGCTAATAAATGATGAGTAT
TTCTCGTGGTGGTTTTGCTGATGGTCTAGTCTGGTTGATACGTGGTGAGTTTCTGCTTCA
TGCAGGCGTTGAGACTTTAAACGTGATCGTAGGTCTGAATGTTCTTTAGATGTGAGACAT
TCTTATCACATGCAGACGCGGAGCCAAACACACACTCACACGCTGCAGTGAGTGACGGGA
AGCGGGTTTTACGTTTTTACAATCCCTTCGCGATTCACCTGTTACCTGTCCCCACAACCC
CCCACCCTCTGCTTTCTTCCTCAGACGTCCCGTCCCCGCAACTGCGCGCTCTTTCTCAGA
GACGGGAGCGCGCAGTTTTAGGCATGGCAATTCACAGGTTTCCGGCTGGTACAAACTCTG
TGAAATAATAGATAATAGTAAACTGAAAGTGCTGGCGCAGATTTTTCTCTCCAAGCACCA
CCACTACTGCGCGCCTCTGGCATCGCATCGCGCCCGAGAAGGACTGGTCTAATGAAATAA
AAGTATAACTAAAGATTTGTCTGCGAGCCACATGTGACCATCAAAAGAGCCATATATGGC
TCGCGAGCCATAGGTTCCCGACCCCTGCTCTAGTGTTTCCTGCTTGTCCACTGCTGTGAA
CCTAACCGCTGTGATCCCACTCAGGGGGGCGATGGGCTACTGCTTTGTGGAGATGAGCGA
CGAGGCCACAGCTGAGAGATGTCTGCGCAAGATCAACGGCAAATCTTTGCCAGGAGCCAA
CCCGGTAGGAGAAGCATTTAGTGATTGGTTTTCATTTTTTTTGTTTTCTGAGAAATTGAC
ATGAACATCTCTTTTCTGAAGCCCACAAGATTCAAGTTAAACCGGGCTACATTTGGCAAA
CAAGAAGCAGGGTGAGTCTAAAGTAAAATATTTCACTGCAGCTCTTTATTTTGGTTTTTG
TCACTGTTATCTACATAGGGAACCAAACAAGTGCAACTTTTACTATATAAAATCCCTACT
TCTGGTTGTCGGGACCATTTCAATTTGGTCCTTCACTAACATGTGACCTTAGAAAAACAA
GACGTCCTTCTGGTTTTAACAATGTTGGCAGCAGAAGCACGGATCTGGGCAGAACTGTCC
AGTCCAAAGTAGTCTGTACTGATCCAGGCTAAACTGAGTAGCTCGCTGGTTATTAAACCC
AAAAATCCCTAAGTTCTTAAACCAAATATAGATCAAAGATGTCTTGTGAATCTGTGTTAT
GAGGATGAGTAACTGTTGGTTCTTCCTCCTGTTGCAGGCCCATGTTTTCTCTGTTTGTGG
GTGATCTCACACCAGAGGTGGATGATGGGATGCTCTACGAGTTCTTCTACAACCGCTACC
CATCCTGCCGCGGAGGAAAAGTGGTGCTCGACAGCATGGGAAACTCAAAGTAAGCATGCA
GCTTGTCTTTGATTCTGAGCCAAAGCTCTACTGATACTCAGATCTGCTTCAACAGCAGGG
AGTGACACTGTAGCTCTTTATCTAGTGCAACCAAGGTGCGAATGCACCTCTGTAGCCTAA
ATGTGAGCACGTATGTATTTAAAGCTTCTCTGTCCCTGTTATCACAGGGGCTGTGGCTTC
GTCCAGTTTCCAGATGAGCGGCTTCAGAAGCGAGCCTTAGAGGAGTGTCAGGGGGCCATG
GGACTCGGCAGCAAACCTCTACGATTGAGCCTCGCTGCTAACAAGTGAGTTCCTCACAAA
TAACAGAAGGACCCCTTTTCCCCCCAGATGTTTTCTATAAGTTCCTGTCGTCTCTACCCA
TTCTGTGGAGATTTTGAAAGAAGCTGAATTTCCATTGGAGTACAGTGTTCCCTCGCTATA
TCACAATTCACCTTTCGTGGCCTTGCTGTTTTGCAGAAGTTTTTCAGTGCAAATTTATGT
GCTATATTTTATTTTTTTACACTAGCGCACTGTGTTCTGCGTCCTGTTTGGCTGCAGACT
TTGTCGGTAAATCTTGTGTGCCATGAAAAAGTGAATGAAAAAGCATGTGGTGAGGGGTTT
TACAGCCTACTTCGTGGATTTTACCCATCGCAGATTATTTTTAGATCGTAACCCCCAAGA
TGAACGACGGAGCGCTTCACTACGATTAAGGCCCACCAGATCTACCTGAAAAACAAGTTC
AGATGTACTTTCCACACTAACTTCAGTGCAGTTAGAAAGGGAATTTCTGAGTGGAAAACA
TTAAAAATGGTTTCTGAAAATTCACAGCTTTGAGTTTGTGAGCAGCTCCGACTCTGCAGG
CCTCAGTCAGCATGAAAGCTTAGTTAGAAGAAGATTCAATAAGTACGATTTGTGGCACGA
AAGCAGGGAGTCCAGACGTGTGTCTTTTGCAGTCTCTCCTTCAGGACAAACGGCAAATTT
TGAGATCTGATGTTGGCCTCCAGAACCATGCCTCTCTGGTGTTGACTTTATTTTTTTCTC
CATCCTGCTTGTGCCTTTATGCTCACAAACATAATAAAAGTGCATTTATGTCACGTGATG
TTTGTTGAAGCAGATATAAGCGTGTGCATGGAGGTCTGAATTAGTTCTGTCTTTCCTCCT
GTTAGCTTAAGAAACAAGCAGCCGCAGCAGTCTGAGCAGAAGCAGACGTGGCCGTCCAGT
TCAGGATACAGCTACGACCAGTACAACCAGTACCAGAACCAGGCCTACCCTGGGTATTAC
CCCTCATGGGGATATGACCAAACTGCGGCCATGTATGGATACAGCTACCCTCAGTATGAC
TACTCGCAGTATGCCACCCAACAGGTGAGTGGGCAGCTCTTCAGATGAGCCTGAGTTCTG
TGGCAAACATCCAAAGTGACTGTTGTTGTTTTTTTCAGGAAAGCGAGGAGGTTCAGGAGG
AGGAGCTGCTGGAAGGTGATTTCAGGTTTAGCAGGATTTCAAACATCAGTGTCCCATGAG
GTCTCCATCCTTATAAGATCCACTTATCATGCACACACAGAGCGGGTTCAAACACCTGAT
GGGTGCCTGTCTTTGGCTGATTTTTCCAATTTTTGACAAGTTTGAGGTCTCAATGGCATC
AAATCAGGGTAAAATGCTGAGCCAAACAACTGGATTCAAATCAGCCTGATGCAAAACCGT
GTGTGATGGTTCTAATACTAACCCTTTACAATTTGCATCAGATCTCAGTCACTTAAGAAT
AAGCTGAACATGGTGAAAAATGTAAAATGCGCTTTTAAACTGCAAAGTATAAACCTCCAA
GCCTCATCATGCAGTTTGGGGATCTTGGGTGTTTTTTGGTGAAAGATTAAGAACTGCGGA
AGTTTAGAACTTTGTTTTTACCGGACACCAAAGCTGCGTTTCTGTCTGTGCTGCAGATCC
AGGCCTGGTGCCGGATGTGGTGGGAGCTAACGCGAAGTTCATGGAGCTGAGCGAGGAGCT
GTTCGACTCACTCATTGAGTGCCAGTGGCAGTCTACAGATTTCATCGCACAGCAGGAATA
CATGACCTCCAGCCTGCCAGAGCCCATCTACTGC
Chart Advanced