SelenoDB
Release 2.0
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Transcript Report for SPT00002176_2.0
Identity
TranscripttRNA Sec 1 associated protein 1 (SECp43)
SpeciesPetromyzon marinus (Lamprey)
Transcript IDSPT00002176
Transcript release2.0
External IDNone
Gene SPG00002083_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward (Reverse in the original sequence)
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00002176_2.0 # Transcript # tRNA Sec 1 associated protein 1 (SECp43) # Lamprey (Petromyzon marinus) # Full length # Forward
CTGGACCCATACATGGACGAGACGTTTGTGCTGAACGCATTTGCCTCCCAGGGAGAGAGC
GTGGTCACCGTGAAAATCATCAGGAACAAACACACTGGGTGAGCCTCCCGCCCGCGGGCT
GCTGGGGAGGTGACTCGGCTCAGCGGTAGCGCGTTCGCCGCTTGTGGAGGCGTGCGGTTC
GAGTCCGCCGGCCTCCCTGGTTATTGCTGCGGTTGTAGCCATAATGCTGCGCGCCATCCG
CCTCGCAGTGGGTGTTAAAGATCACGCAATGTCATTCGCAAGAGCAGGCCATTGTGTGCC
GATGGATGGGTCCACATTTTCAAAATGACCCGAAAATTACGCTTTTTGGATTATACATAG
CATCCATTGGTGCCCCCTGCTGGTCGACTAATGCCCCCCAAGTGACTCTTGTAAATGAGA
CTATACTGGTCGCTTGAATTCTCAACTGATAAAAAAAAATCAATCTGAAACTCATGCAGT
GTCTGCTCTTTTTGCAAACTACACTCTTTTTCAGTGGATTCTGTTTCAGTTCCCGACCAT
GGATGAACGTCAGTCAAAAGTAGTGTCTTGGCTAATGCCGGCACCATTCTTTAATTCATT
TGATCGATTTTTTTACAAATTGCTCGCCATCCCCACATCCTGCCGCCCAAAGGCTGAACC
CCCCCCCCCTTCTGAAGCCTCACCCAGCACAAAGCTGATGATGACATCACCAGCTCTGTG
AAAGAGAGCTTTATAGTTAATCGGATTCCTCCAGTATAAATAAAGATTCTGATTCTGACC
AAGCCCTGCCCATCACCACCCAACTATTTTGCATTAACCGATTAGTCATGGCCGGGCGTA
ACGCTCATGCATCACGGTGAGAAGTTCCTCGATTTGGTTCCCGACTGGGGCGCCTTTCTG
CATGGAGGTCATACGATCTACTGTTCTGAGTGAGTTTCCTCCGGGCAATCCAGTGTCATC
CCGTAGCTAATAAAAAAATATATATTGTTACTGGTATTGGACAAAACATCCCAATGCTGC
TGAAAAATTACCTGCACATTACTCAATTGGGGTTACACATAGCTATCGAACAAAGATGGT
GACTGCATCGCGCGCATTCACATGCGCTTCTGTGGCCATCTGGAACGCCTTTTGTGTTCA
GTTTATTGTCCTTCACCCGCACCTCCAATTAGCACTGTTGGTATTTGGTGCAGAAGAAGT
TCAACATACATACATTGCAACTACTGTGAAAACCTAATGGAGTCCTTCCGAAGAAAGTCT
TGAGACTTTCTTGGGTGAACAAGCATAGTAACAACAATAATGATTAAGATTTAAAAAAAA
ATCATGCGATTGAACTGCAACTGGGTAGAGTAATTGATTACTTCGATAATCGGATAGCTC
TAACCTCAAAGGTGTCCTCGCCTGGTAGGAGGTCGTGGGTTCGGTCCTGACCCTGACACC
TATATATTTGGAGTTTGCACGTTTTTCCCATGGTCATGTATAGTTCCTCTGGGTCCTCCG
GTTTTTCCCTTCACATTTAGAATCAACATGCGCTTTTAGAGTATTTGGCTGCTATATATT
TCGACGTGATAAGCCACTTTGTTGAGCCATCATTTGTGGCCAGGTCGCTTCTGAAAAAGA
GCTACGTAGCTCCGTGGGTCTTACCTGTTACAATAAATATAGTTCAGTTTATAATCCACA
GGCTCAGGCAAGGCGATCTGCGTCTCCGTGTGCTTTGTGTTCACAGCGGCCCGGCTGGGT
ACTGCTTTGTGGAGTTCTCGGACCAGTCGAGCGCGGAGCGGTGCCTGCACAGGCTCAATG
GGAAGGCGCTTCCCGGATCCAACCCGGTCAGTGCGGGCGACGTGGCTACGGGCCCCAACG
GCCCCATGCATAGCGGCCTCCCTGCAGCGCTCGACACAGCACGTGCCGCTCTGTGGGATG
CGCTGTGGGGGAGGGCGAGGGTGGGAGGGGCCGTCCCATAGGGAGAGACTGGCCCCAGCC
ATAATAATGTGAAACTTTCACCGCTGGCTGAGGGCCACCACAGCCCAGTGTCTGTTTGGG
GAGGGAAACGCTTTGACTTGACAGGCAAAGTATGACTTCGATGTTTTGTATTAAGTTTAA
GAGGGCAACAAATGACAATGAGGTAGATCTTAAGTTGCATACTGGGACGTGGGGTCGGAG
TCTGCAGTGGTACAAAACGCAAAGTTACAAAGAGCCGTTTGTAGTTGCATAGGACGATGC
GTGGCGCCACGTAACATTTTCCTCCTTTGCGTTTCAGCAACGGAGGTTTAAACTCAACTA
CGCAACACACAACAAGCAACCCGATGGACGGTAAGGATCGCGAGCGCGCCTGCTGTACCA
CGATAACGATACCCACTGACCTAACGGTGCCTAATAGGGTTCTTGCACACAACNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACTCGGCTTCTGGGAAGATAATAGG
TGGTAATCCTCCCCTTCCCCCCCCCCCGCCCCCTCCCGTATTCACGCCAAGCCTCGCGGC
TGTCGCAAGCCCGGCTGTGCCGCACGAGCCGATCTTTGGGTCGCCAGTGGAGAAAAATCC
ACAGCATTTCCTCGGTTAACGGTGACATTGGTTGACGTTTTTTTTAGTTAAAGTTTCGTC
TCCCATAGGAACCGCCGTGGTTTCGACTCGCGTCAAAAATTTGATTCGCGATATGTTTAC
GTGATGCACGCGGGCGCCAATTTCGGCCAAACCAAGCGCTCGTGAGTGGGCTGAGTATGC
CTTAGCCAATCAGCGATGGCCATTTATGAGCGTTTAGACCTCGGCTGGCTTTTTTTTTAC
ATTATGCTTTCTGTTTTGGCAGCGGAAACAGCTCTCTTGCAGACTCGGTGATTATTACTT
TTTCAACTTATAAGTGACTTCGGTTAACAGTTATTTTAGTTAACAGTTTTCGTGTAACGG
ATTAAAAAACGTTAACCGAGGGACGACCGTGATGCTTTTGGACACCTGCTTCGTGTTGAC
GTAAGCTGCAAGAATACAAAGGCAGCATGTTGCTTGTTTCCCCATCAAGAGAGGCCGACC
AATTAAACTGAAGATTGGGAACAACCTCTATTTTTCCTTACAAAAGAGACGCCTATTCTG
GTTTCACCAGGGCTGTTTTACTGGTTTTTAAATGAAGGTTGAATGAACAGCGCTGTGTTC
CTGTGGAGTATTGCAGGTTTTGTCTTAATGGCCAGCAAGCTCCATTTGCTAACAGTGTCC
TTGTGTCTAGGGTCGTCTTCAACCCAAGGCCACAGAGGAGTCAGAGGTGTGGATGATTCA
CGCACTCTCTCACTGCACATGCAAATCATGACACGCGTAGCGATGGATCTGACCCGCTGA
TTAAAACACATTCTTACGCTCACAACGCATTCGTCAAATTGTACCGATGGTATTTTAATT
CGTGGTCATTTTTTTACGCGACCGACTCTCGGGCCGCCTGCATCCCCGAGAGAGTCCATA
AAAAAACGTTGGATCTTGAAACACAACGCGTTTTTGAACACGTGCGAAGGACGTGATATT
ACGTTTGGGGTGCTCTGTTGTTTTGTGGCATTTGGCCATGGTTAATGTTGGTCAGCTTGC
TGGCATAGTTGGGAAAATTAAATCTCCCGGTTGTGGTGCTGCACACTTGGGAATCCAGCA
CTGTGCAGGCAAGGGTTGGTGGATCACATAGATCTATTTGTGATCTATTTTGAAACCCCA
CTCATTTATTTATCCACCCTCTGTCCCACCCCCCAGCCCGGAGTTTTCCATCTTTGTGGG
TGACCTCTCCGCAGAGGTGGAGAACCACCACCTGTACAACTTCTTCCTGCAGAAATATCC
GTCGTGCATGTCCGGCAAGGTGATCACCGACCTGTCGGGCATCTCGAGGTGAGCGCCCCA
CAGGGCACGCGGGTCTAACAGCGAAAACGCGTTGTGTGAAAAACGCGTGCAGCAAAGACT
TACCCTAGTGATCACCGACCTGTCGGGCATCTCGAGGTGAGCGCCCCACAGGGCACGCGG
GTCTAACAGCGAAAACGACTTGTTGTCGGCACGGGCAGCAAAGACTTACCCTAGTGGCTT
TAGCCTTTGAGACTTGTTGTCGGCGTTTCCGTCACCTGCAACAAGGCCTGTATTATACAG
ATGTCTAATTGCATGGCCACATCTGCTTCCTTTGAGCTCATTGAAGCAAATGCATACTTT
TCTTGTTAGTAGCTTCATCATAATCATCGTCATCGCCGTGTTATATGCACAATTGTGATC
ATGCATGCGGTTTTGCCTCAAAAGCGTGCAACGTTGTGTGTGCTGTGGCGTGGTGCGGCA
GAGGATACGGGTTTGTGCGTTTTGGCGAAGAGACGGAGCAGAGAAGGGCGCTGGTGGAGA
TGCAAGGAGCGTCGGGGCTTGGCAATCGACCAATCAAGCTTAGCCTCGCTACGCCCAAGA
GGTGATCCTGCATCATCCTCATCGTCATCTTGGCTACGGAAGATGCATGCCTTAGGGTTG
TGCTCCAGATTTTCGGATTAAGCCAAAGCAATCTGGATATTTATTGGACCTCGGGATGAA
ATTTTGGACGATCCGAGAGATTTTTTGTTGTTGTTTCGGATTGGTCCCAAAATATGACAT
CACAGAAAGTGATGTCACTTACACTGTGTCACGTCCTTGAGTTTCCACCGAGAGTGGGGT
TGCGTCACATTGGGCGACTTCACTTTCACATGCTTTATGTAATGTGAATCCTATGAAAAT
CCTCCCCAAAAATGTGAATGTTTTTCTGTAAAAAACGGAAAATCTAAAAAAAAATTTAGC
GGGAACTCATCCCAAGAATGTTTGACTATTCGTGCAGGCGCTTCCTCGCATCCATAAATG
AAAATTATTACTTCTGGGCGCTCCATAAGCGTTATCCAAATATTACTCAGATTTCATTTT
TGGGTTAGGCCACGTATTGATCGGGCACATTTTTTGTTGCAAAGCCCTCCACCACCCTTA
AGCAGCCAACCAAATTTAAGTGCCACGTGTATCAAGCGATCAGTGCGCCAGTTAATGTTT
CAGCTAGCCGGTAATTAAAAGAACCGAGCTATGATTCACTACCGCACACCACACATTATC
TCTATGGCTGAATACTGCACTCTGTTAGCCTGCTGTTGCCCGTGGGCAATGTCCCCTGCT
GTTGATGAACGCCGCGGAGATGTACAATGCCAGTTGGCTAAATCTATTCCAGTAGAGCAA
TGCCTCGGGGCAACCTCTTCTTCTGAAGTGCTCACAACTAAAATTATATTGGTATGCTTG
TACATACATATGCGTGTATGTTCATGTAGGGCGCCACGGTGGCGAGATGTTAACTACCTC
GCGTGGTATACAGGAGGTCGTGTGTTCGATCCCAACCCTGACGCCTGCTGTATATTTGGA
GTTTGCATTTTCTCCCCGTGGTCGCACGGATTTTTCTCCGGGTCCTCCGGTTTTTCCCTC
CACATTTAGAGTCAACGTGCGTTTAGAGGGTTTGACCGCTATAAATTTCAACACGATAAG
CCACTTCGTTGAGCTATCATTCGTGATTGAAGAGCTACGTAGCTCAGTGGACCTTACCTG
GTGGAATAAAAATAGTTTAATGTATGTGAATGGTGTATATTTATAACCAGTTAAGAGCCC
TCTGACAAAGGGCCGTGCGCAATGGCCCGTTGAGAAACCCTTTGCCTCATTTTTATTGGG
AGACCTTGAGAGCATTGCAGTACCCTCCCTGGCTGCGGTTACCGCTTGTTCAGTTTCACG
ATTCATTGTTTCAGGAGGGTCTTTCCAAGTTTTCGCAGTGGGTGGTCGGGGAGCAATGAT
CGCTGTGCAGATTCCGATCGTGTAATTTGCGGGTAATTTTTCACGTTTGACGAATTTTGA
CGATGGCGCCGGCACACAATGGCCTACTCTTACGGATGACATCAGGGGATCTATTACTTT
GAGTTTTTTTGTTTATTGCAGCGCGACGCGAGCCCGGCACAATACGCCAATCGCAAACGG
ACGGGAACCACAAACACCTCGAACAGCAACTAGAATTTGGCGCGACAGGACCTCGTGAAG
GGAGGATATTAGACTAGCTACCCCACCCGATTGGTGACCACGTGCAGGGACGTGAAGATT
TATATTGGGTGAGGGGAAAGGGCGAAGGGGAAATGTAATTCGCAAACTGGAGGAAGACAG
GGGGAGGGGGACACCGGGGGATCTTTAACATCCAGTGTGAGGGTAGACAGTGCGTAGCAG
GTTTAAGGTTGATATGCCCACAGTGATAACCGGGGCGGCCACTGGAATTCGATCCGCGAA
CGCAATTTGCCACTCGGCCACGTCACCGCCACTGAGTCGAATGGTCCACCCTTGTACATG
TTGACCGCTGCTATTGTGGCCGTTTATATCTTCAGAGCTGGTCCGGGAAACAGAAGTGTG
AAGTTTGTGTACTCATTGTCTGTATGTTGGTTACATGTGTTTGCGCTATAAATAGGTTAT
CTTTATCAATCCTGTCTCCGAGGGCACTGACTTAACAGTGATAACTTTCCACTCTGCGAT
TGTGTACATATATGCGTGCACATAATGTATGTTCATGTGTGTGTGTGTACACTTTATGCG
GAGTGGTACTGCAGCGGTTAGCACGTTGCGCTTCAAACCTGGCTACCGAGTTTGGTTCAC
GCCCCCGGACAACACCAATGACGATCATCTGAATCAGTCTTGGGCTTCCCCTAGGTCGGC
TGTGCCATGAATGAGTACCTGGTGTGGTGTGTAAACATTGCAATATGTGTTATATGTACA
TTGGGGCAAGTGATGTTAGTGAGTAGCACCTATGAAGGCCGGCACAGCATTTGAAGGGGT
GGGTGGTCAGCAGCACACCCGGCCGCCTTTGTCTCCCAAGTGGCAATGTTTACACACTGC
CCCAGGTACTCTATTGAGGCTGAGACAACCTAGGAGAGGCCCAGGACCGGTTTAGCTCAT
CGTCACTGGTGTTGGCCGTGAGCGGGAATCGAACTTGAGTGCCCTGGTTTGTAGCGCAGC
ACGAAAATATGTACGTATGTATGCCGGTGTATTTATGCGTGTCTGTGTGTGCGTCTTTTT
GTGCCCAAGCTGAACCCATGTGCTCTCAGTGCCAGCGGTGCTGGGAGGTCTCGGCAGGAG
TACGGACAGAGCCAAGGCTACAGCTACGGGCAGTACTACCAGCCCCCCAACTACTACACA
CAGTGGGGATACGACCAGTACACAGGAAGCTACAGCTACAGCATGCCTCAGTATGGC
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