SelenoDB
Release 2.0
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Transcript Report for SPT00003118_2.0
Identity
TranscriptSelenoprotein R (SelR)
SpeciesNeotoma lepida (Desert woodrat)
Transcript IDSPT00003118
Transcript release2.0
External IDNone
Gene SPG00002996_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationReverse
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR         Forward   Reverse
Sequence
>SPT00003118_2.0 # Transcript # Selenoprotein R  (SelR) # Desert woodrat (Neotoma lepida) # Full length # Reverse
GAAGGTCACAGATCATCACCACCCTGGCTGGCTTAGGATTTAACCAGAGCAGATCATGCA
GTGACCAAGGCTGGAGTAGCTGGCCAGGGCAGCCCCAGTGTCATTCCATCTCTTGCACAG
CCTAGAGGAGATAGGCAGAAGCTTTAATGAGGGCCAGGGCCCCCCCCCAGACAGAGCCCC
ATAAGGGTGAGTGTGGACAGCCAAGGAGGTGGGTAGCAGGATGAGGGGAAGAGAGGGTTT
GGGTACAATGTCATTCAAAGATGAGCTAATTCCAGAGTCTCCTACAGACTCAAAACAGCC
AACGGCTTAGCACCGTCCCCAGGGTCATCACCGTAGAACAGTAGAGACTTTCCAAAAAGT
GCTTCATCTAAGGCGATTCCATTTAGAGACAAGGCGTTGGGAGCTTCCTGATGCTTTAAC
CACCTCCTCCCAGCCCCCCAGTCTGAATGTCCAGGGTTCCGACACTAAAGTGGGGCTGCC
AGAAAGTGGGCATACCCATCTGGGAAGGAGAGCTGCTCACCTAGTGCCCCTGGGAGGCAG
GAGCTTCTCTGCCTGGAAAAGAGAGAAGAGAAAACACATCATTAATTCATGCTTCATCTG
GGCGTGATGGCTCCTATCTGCAAGTCTCACATTCCAGAGGCTGAGGCAGGAGGTTCAGGA
GGCTCGATCAGGAGGGGCTGTATGGTAAGTTCTAGGCNACTCTGGGCCACAGTGGACACT
CTATCTCAAAAATACTAAAACCTATTAGGAGACTCAGGCAGTAGATCTCTATGAGTTCAA
GGATTGACAGGGCAATAAAGCAAGACTCTGTCTTNAAAAAAAACAACTAAAGCCAGGGAT
AGTGAGATAGTCCAATGAGTAAAAGCACTTGCCAACCAAGCCTAACAACCTGAATTTGAT
ACCCAGGTTGAAAGTGGAAGACTTAGAACCAATTCTCATAAACTGTCCTCTGACCCCCAC
ACATGCAGTGGTATGTACACACCCACAAATAAACTAAGTAAATAAATTAAAATGTATTTT
TGGCAGGGGGCTGGAGAGATGGACTGCTCTTCCAGAGGACCAGGGTCCATCCCCAGCACC
CACCAGGCTAACACCAACTTTAACTCCAGTCCCAGGGATCAGATGCCCTCTTCTGGCTCC
TCGGGCACTTCACACATGTGGTTCACAGAAATACATTCAGGCAAAACGCCCAAACACATA
ATATAAAAATAAACAGAGAGCTAGGCGGTGCTGGCACACGCCTTTAATCCCAGCACTCGG
GAAGCAAAGGCAGGCGGATCTCTGATCTCAGAGTTTGAGGCCAGCCTGGTCTACACAGCA
AGTTCTTGGATAGCCAGGGCTACACAGAGAAACCCTGTCTCCAAAAAATAAATGAATGAA
TGAATGAATGAATGAATGAATGAATGAATGAATGGAGAAAAATATACTTTTTCTGAAAAG
TACTAAAACCAAAGAACAAAAATCATGATTCAGACTCCAGGCCAGCTGAAGGGCCCCAGG
AACCAGCTCAAGGAAGTCTGCACACTGTTCATTTCCTGAGATCTACAGGAGAACCCACAG
TCTCTTCTTCCTTCACCAGACACAGAGAAGAAAAGAGGATGACAGGACACAAATATCGCC
CTAGCTCAGTGTGCCCCAGGCCCTTCCAGACTGCTCACTAACCCCACAGTAAAGCAATGG
TAGCTGTTACTTGACAGCTCCATTTTGCAACTAAGAAACTGAATCTTTATTCAGTCTGAC
TACAGCCCTTGCCCACTATTGAAAAGGTTGATAAAGGAGCAGCAGTTTTATTGAGTTGTT
GCTATGTGCAAGGCCCCAGGGGTACCATATCACATTCAGCAGCCCTGTGATAGAAAATAT
GTTACCATGGCCACTATGCAGAGGAAAGACAGACACTCAGGTTCAGAAGCAAGCCTTTGG
TCACATGGCCCAGGTCTTCAGCCTTCACCCACCCCTACATCCAACCGAAGATTCCAGGCA
CATGGAAAGGCCAGGTCTACAGAGAAAACCACATGCCACGCCCTCCCTGAGATGTTCCCA
TATAAGATACCCTGGACATTTGCCCCCTAGACCTGTCCCTCGGCCAGCTTTTGAGGTGCC
ATTGGTAGGTGCATTTTGCCACACACAAAGCATACACAGTGTGCCCTCCCTGCTGCATTT
CCCTCAGTTACAACAGGATGTCCCCAGCTGCAAAAGGTGCTCACCTTTAGGGATGAACTT
CAATGAGCTGCTGAATATTCAGAATCGGGATTGTCCCCGCTTGGGGCCATCATTCAGGAA
CTCGTGGCCCAACCCATTGCCACACTTGCCACAGGACACCTGGAAAAACCCAAACATAGT
CACCCTGCCTGCTGCAGATAAGTAATGCTTCCACCATCTGCCTATTTCCCAAGCTAACTA
TAGTTCTGAGGGGTGGGGCCTGTGCAGGGAAGCTATCCTAACGCTCATGTTCTCTCAGAA
TACAAGCACTCTCAAAATCCAGGTGTGGTGACTCACACCTTTAGTCCCAGCACTCAGGAG
GCAGAGGCAGGTGGATCTCTGAATTCGAAGCCAGCCTGCTCTACAGAGTTTCAGTACAGC
CAGGGCTACACAGAGAAATAGTGTCTTAAACAACAACAACAAATCTTGGGGTGCCAGCAC
CCCAGCTTAAGGTGGAGACCTGGAACAACCTCATGAGGGAGCAAAGGAAGACAAGTGTAA
CCAGTCCCAAGACCCTCCCTGGCCAGCACTCACGGGGGCTATCACACCCACCTTTAAAGC
TTCAGGTCGGTTTTTCTCAGGGCGCTTGGTGACACTGTCTGCATGGATGGTTTCAGTGAA
TGCTGGCCACGGGGAAGAGTGTGCATACTTTGAGTGGCTGGAGAACAACTCGTAGCCACA
CTTGGCACACACATAGACACCTGTAGCACAGGAAGAACAAAAGCAGAGACATTCATCAGC
TGCATCTGTCTGGTATAAGTTTCCTTGACCTTGGACCCGGGAAATGACAACACTAGCACT
GCCCCCATTGTGACAGGAGACCACACACCATCCCCATACATCCCCTGCTCACAGCCCATT
GATTGGCTCTGGGAGACCTAGCAATGCCTGGCTCAGTTACAAGGGGCCAGAAGTCACTCA
TTGGGCTCATTTCCGCTACTCTCAGTGGCCCTGTGATAGGAAATCTTGAACATTTTAATT
TAATTATTTAGTTTTGGGTGTCTTAAAAGACTTTTACTTTATGTGTATGGGTGTTTTGCC
TGAATGTGTGTCTGTGTACCACATGTGTGCAGTGCGCACAGAAACCAGAAGAGACCAGAA
GAAAGGGTCAGATTCCCTGAGACTGGAGTGGTGAGAATGAAAGCCAGGTCCTCTGGGAAG
GCAGGTTTTTAACACTGAGCCATTTCCAGCCCCCTTGGGGGTTTTGTTTTGTTTGTTTTG
AGACATCTTGTGCCAGTTAGTTTCTGTCACATCTTGTGCCAGTTAGTTTCTGTCAGCTTG
AAACAATTAGAGTTACCCAGGAAGAGGGACTCCAGCTGAGGACTTACCTGGATCAAACTG
GTCTGTGGGCATGTATGTCTACGGGGACATTTTCCTGATTAATGATTGAGGTGGGAGGGC
CCAGCTCACTGTGGGCGGTGCCATCCCTAAGCAAGTGGGTCTAGGCTGTATTAGAAAGGT
AGCTGAGATGGGGCTGGAGAGATGGCTCAGTAGTTAAGAGCACTGGCTGCTCTTCCAGAG
GACCCAGGTTCAATTCCCAGCCCCCATATGGCAGCTCAAAACTGTCTATAACTCCAATTC
CAGGTGATCTGACACCTTCACACCAATACACATAAAAATAAAGTTAAAAAAATATTTTTA
AAAAGAAAAAGAAAGGTATCTGAGCCAGGTGGTGATGGCACATGCCTTTAATCCCAGCAC
TCGAGAGGCAGCGGCAGGGAATCTATGTGAGTTCAAGGCCAGCCTGGGCTACTGAGTGAG
TTCCAGGATAGCCAAGGCTGTTACAGAGAAAGCCTGTCTCGGGAGGGGAAAAAAAAAGGA
AGGAAGGAAAGTAGCTGAGCAAGCTAGGGTAGCAAACCAGTAAACAGCATTTCTTTGTGG
TCTCTACTCAGTTCCTGCTTCCAGGTTCCTACCTTGGCTTCCCTCGATGATGGACCATAG
CTTGTAAGCTGAAATAAACTCTTTCCTCCTCAGACAGGTTTTGGTCAGTGTTCTTTCACA
ACAGAGAAACAAACTAGGACAAGTCTCACACTGTAGCCCAGGCTAGCCTGCAACTATGTA
ATCCAGGCTGGCCTCAAATTTAAGGCAATGCTTCTGCCTGAGCCTCTCTACCCTGGATTA
CAGGTGTGAACCATACTTGGCTAACATTTCCATTTATGAGCAAGAAGGGGAAGGTTGGTG
TTGCAGACACATGATAAGGTATGTAGCCAAGAGAAAACCCTGAATATCTGATTTTAGCCT
TCCTTTATCCCTGGACAAGATCCACACAGCAGGGCCCCTAACACTGCCAGTGCAACCATT
TGGTCCCCTCTCTCCTCAAGTAGGCATCTCTGCCACTCAACAAAGTTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCTGCAACCCACAGATCCAGGGAGGCTACCTAGCAGGAA
GGACCCTAGGATGACTGTAGCATAAATTAAGTTTTGGTTTTGCCCGATCACTGGGCATGC
TTTAGTGAAACATTTCACTATTAGGATAAGAATTTGTACCTCTATTTATGTTCAAGATAT
CTGTATATTATCTCTCCTCCAGTTGTACATCGAATGTTTTAATAATAATAATAATAAAAA
GATTTATTTATTGTGTATACAGAAGAGGGCGCCAGATCTCATTATCTCATTACAGATGAT
TGTGAGCCACCATATGGTTGCTGGGAATTGAACTCAGGACCTCTGCAAGAACAATCCGTG
CTCTTAACCTCTGAGCCACCTCTCCAGCCCTCAACAAAGTTTTAAACTGGATACCCAGCC
ACAGGCCTGATCTCTGAGGAAGAGTAGACTGGTCCTAGGGAACTGTCTTCCAAGCCAAAC
AGGGAACCCTAGAAAAACAACTGCCGGGAAGGAAGGTTTCAACCTGTCGCCAAAAGACCA
CATGAGTGAAGGAATAAATAAGGTTGCAAAACTGAATTGCATAACTGTTTGAAAGACTAA
AAAATAGGAACTTGACAGGTACTGAATCACCCATCACCCACCACTTGAGGAGTGTGAACT
GTTCAGTCTGTATCAGGAACTGGAGAGGAAGCAAAACATAGTGAAACGTCCAGCTTGCCA
GGGCAGCCTGAAGGCAACCAAGAGGGATTCAAGAGAGGCCTCTGCCCAGTGACCCTGTAT
TACAACTGGCTTATACAGATGCCCAGTGTCACAGCTCAGCCCGCCGGAGGACTGACATCT
AACAGATCCCGCCCCAGGAACGCCAATGCCATAGTTTTACCAAATTAGTCCAATATCAGC
AGAACCCAGCAAGAAGGGGACTCACTAGAGTCTCTAACAGCCTGGGGCTACTGCACCAAT
GGTTACACTTCACTGACACTGGTAAGAGCCCACTGACACCTAACTGAGAGGACAGGGAAA
CACTTGGGCCGGCATATTCGGAACTGAACGCAAAGTGCAGAGCTTGTCCACTCATCCAAG
TCAGTCTGGAAAGGAACACAATCAGGGCAAACTCCAACACGGACCTTGGATCACATATCC
CCATCGTTCCGCTCCAAAGTTCCGACCACTCTGGTACCACCCCAAAGCACTCGGCCCAGA
GGATCCCTAGAGAGATCTACACTGAAGTTCAAGGCCTGTCCTCCTCGAGAACAGAGATTA
CAGGAATGCCCCCTCTCCTCTCAAGTCCTCCTGCTCCCCAATGCCGTCGCCAGCCCCTCC
TCCGAGTTCTCTTTCCCAAGCTCGCTTCTCCTCAGCAGCCACGGTCACCCCATCCTGGGC
TGGGGTCATCCCAGTCCCAGGCTCAGGGACTCCACCACCATCCAGAAGGCGATGCCTGCT
TTAATGCCACAGGCTGTACCTGGCTCGAAGTGATTCTGGAAAACCTCGCCTCCGAAGAAG
CTGCAGAACGACAT
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