SelenoDB
Release 2.0
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Transcript Report for SPT00003126_2.0
Identity
TranscriptSelenoprotein N (SelN)
SpeciesIctalurus punctatus (Channel catfish)
Transcript IDSPT00003126
Transcript release2.0
External IDNone
Gene SPG00003004_2.0
Annotation
Prediction method(s)
(Selenoprofiles, Ensembl 68) [Report annotation error]
OrientationForward
Structure gene structure

FeatureCol PromoterCol Coding exonCol Non coding exon (UTR)Col IntronCol SECIS
ResidueCol SecCol Cys or Other

ToolboxFull length   Spliced   5UTR   CDS   3UTR    
Sequence
>SPT00003126_2.0 # Transcript # Selenoprotein N (SelN) # Channel catfish (Ictalurus punctatus) # Full length # Forward
TTCCTGTTTTTCCAGGAAGCGGCGCTGAAGACCCTAGGAGCAGAAGGACTTTTCCTCTTC
TCGTCTCTGGATGTAGATCACGACCTCTACCTCAGTCCCGAGGAGTTTAAACCCGTCGCC
GAAAAGCTCACAGGTTCACTCGTTCACGTCGCTGCTCCTACGCGATGCGACATCGATGCC
GCGTTTCAGTTCAACGACAACGAAAAGAACCCGGGAATGTTTTTAACGTCTGTCGTGTTT
GTGTCTTGTCTAAAGGCGTCGCTCCTCCTGCGGAGTTCGAAGAGGAGTTCGTCTCTGACC
CGAACGGAGAGAAGCTCACGCTTCACGCGGCCATGCAACCGCTCCTGCTCGAGACCATGA
CCAAGAGCAAGGACGGCTTTCTCGGGGTAAAGCGTCATCCTCCGCGCCGTGTCTTAATGA
CGCAATCGTCACATTTTACCCTCGTCCCCTTTCTAAAAAAAAAAAAAAAAAAAAAAAATT
TCATTGATTAGAAACCGACAATTTAAAAAAATATTTTTTGACCAATCAGAAGCCAGAGTT
GTTTTTCCTCCGTCTAACTTTATTGTAGAACGTATCCGCCTAAGTCAGTAAATAAATGCA
TACGTAAAAACCTTTATGGTCTTACCCATCGTAGAAAAAAGGAAACAAGTGAAAGAAAAC
GAATTTGTTTTGTCTGTAGGTTTCCCATGGTGCTCTGAGTGGGCTGCGTTCATGGAAGCG
TCCCGCTGTTCCGTCCTCCAGCTTCTCGGCTACTCAGTTCCGGATCTTTCTGCCCCCGAA
GGGTAAAGGGGAGCCGGGGGACACGTGGTGGATCATACCGAGTGAGCTCAACATCTTCAC
TGGATATCTGCCCAACACTCGGTACCACCCGCCCACCCCTCGGGGCAAAGAGGTGCATTA
TGATTGGAGCTGAAATCGAGCATTTCGCTGACCAATAAATGTTTTTATTGATCTTTTTAT
GGTGCACGTGTCACGTAAATCACGTAGATCGATCGATAAGAAGAACGATATCTTGTGAGA
GATCACCTGCAGCAGAAGTAATGGACGGTGGAAAAAAATTCACAAAAATACTCTGCTGTC
ACGGATATCCAACAATCGCAATCACAGCTCGGGTTTATCCAAATAAAAAAATATATATCT
TTGTTAAATATAGGTGTGCAACAATTATTGGCACCCTTTTAGTCAGTACTTTGTGCTAGC
TCCCTTTGCCAAGATAACAGCTCTGAGTCTTCTCCTATAACGCCTGATGAGGTTGGAGAA
TACATGGCGAGGGATCTGAGACCGTTCCTCCGTACAGAATCTCTCCAGATCCTTCACATT
TCGAGGTCCACGCTGGTGGACTCTCCTCTTCAGTTCATGCCACAGGGTTTCTATGGGGTT
CAGGTCAGGGGACTGGGAGGGTCATGGCAGGATCTTGATTTTGTGGTCATTAAACCATTT
CTGTGTTGATTTTGATGTATGATTTGGATCATCGTCCTGCTGGAAGATCCAACCACGGCC
CATTTGAATCTTTCTGGCAGAGGCAGTCAGGTTTTCATTTAATATCTGTTGATATTTGAT
GGAGTCCATGATGCCATGTATCCTAACAAAATGTCCAGGTCCTCTGGCAGAAAAACAGAC
CCCAAAACATTAAAGATCCAGCTCCATATTTAACCGTGGGCATGAGGGACTTTTCCATAT
GGCTACCTCTCTGTGTTCCAAAACCACCTCTGTGTTTATTACCAAAAAGCTCTATTTTGG
TTTCGTCTGCCCATAGACCCCAATCCCATTTGAAGTTCCAGTCGTGTCTGCACACTGAAG
ACGCTCGAGTTTGTTTTTGGATGAGAGTAGAGGCTTTTTTCTTTAAACCCTTCCAAACAG
CTTGTGGTGATGTCGGTGACTTCAGATTGTAGTTTTGGAGACTTTCTGACCCCAAGACGC
GACTAACTTCTGCAGTTCTCCAGCTGTGAGCCTTCCGTCCTCTTCACAGTGCGTCGAGAC
GATACAGACACGCGTCCGATTCCAGGTCGATTCATAACATTTCCAGTCGACTGGAACTTC
TTAATTATTGCCCTGATGGTGGAAATGGACGTTTTCAATGCTTGTGCTATTTTCTTATAG
ACACGCCCCATTGTGTGAAACTCAACAACCTTTTGCCGCACATCACAGCTACATTCCTCG
CTCTTACCCATTGTTACGAATGACTAAGGGAATTTGGCGTATGTGTTACCTCATATTTAG
TCCCCCGTGAAACAGGAAGTCATGCTTGAACAATTTCCTGTTCCTAGTCACCCAGGAGTA
CTAAATAAATGTAAACTATCAATGGGAATATACTTCAAATATAATTTTCTCATATGAATT
CATTTTTTTAACCAAAAGGTTAAATAATGGACAATTTTTTGCTCATACTTACCAAGGGTG
CCAATATTAATGGAGTTCACTGTGTAGAAAAGAAGGAAATGCATGTGTATAATAACAGTG
GTATCTGTGTGTTTTTAAATATCAAGGTCCTGATCTGTGTTGTGGTGTCGTCCACGACTT
AAACGTTTCCCTTTTGTTCTGGCGCCCTCAGGTTCTGATCCACACCCTGCTCAGCATGTT
TCATCCTCGCCCGTTCATCAAATCCCGCTTCGCTCCTCAGGGAGCCGTGGCCTGTATCCG
AGCCGTCGGCGACTTCTACTATGACGTCGTGTTCAGGTATCGCGCTTCGCGAGTTCACAA
GTTGTTTTCCTCGAAACTCCCGAGAGAGTTAATTATTTAAAAATAAATAAAGCTAGGATT
TCAGGAATGTTCTGGAATTATAGAGCTTTTTACTTTCGGTCCGATATGAAGCTCGTGGGA
CAAGAAAGACCGTTCTCGTTAACAGCAGTCATTCCTTCATCCTTAGTAACTGCCTGGTCG
GGGTCGCGATACTTTTAAATTGAAGTACTGGTTTGTTTACATTTTTAGAAATCGAACGAA
GTAGATTCATTCGGAATCTAGCAGGGAATCGCGTGTGATCGCCGGGTGAGTGAGCTAGGG
GGGAAAAACAGTCCCTTGCGCATCTGTACCGCATGGTGTTGCCGTTCGGCGACAATGAAT
TCATCTCCAATTTTTGATATTTCAATAATACAAAACTAAGGGGGCGTTAACGTTGACAGA
ACAAAACATGCCATGTCACATGACTAATTCACGTAATAAAAATCCATTTTTCAATGTAAA
TGTAATAATTCATGCAGTAGAGGGTTAAAAAAAAAAAAAACAGGTTTAGGCCACACCCAC
TTTGGGTGTTTAGGCCACACCTCCTTCAGATGCAAATATTTGGAGCAGACACACACACAC
ACACACACACACACAGAGAGAGTGTCACTGCATCACATCTGCTTTTGTTCGTGTTCCGTC
CCTCAGGATACACGCAGAGTTCCAGCTGAACGACGTTCCCGATTTCCCGTTCTGGTTCAC
ACCCGGTCAGTTCGCCGGCCACGTCGTGCTCTCCAGAGATGCATCTCATGTCCGAGACTT
CCATCTGTATGTCCCTAATGACAAGTGAGTAGATCACAAGCGCTGAAACTGGAAACAACC
CACCTTTGTGAAAACGAAAGGGAGTGTTTCGACGGTACCGTAGATGCCGATCGGTTTAAA
CGCCGCGCGTGATATCGTTGCTGTCACGGTATCTACGTATCGTACCGTATCGTGAGTATA
TATCGAACGCAGCTGGCAGATCCCTGATCGATGCACGGTGTCCGTAGGTCTCTGAATGTT
GATATGGAGTGGCTGTACGGTGCCAGCGAGAGCAGCAGCATGGAAGTTGACATCGGCTAC
CTGCCACAGGTACATGGACACCCACATAGACACACCTCGTTCTACAAGGTGGACAGAATG
TGGTCTTTATAAAGGAAATTTATTTATTTATTTATTTTTAAAGCTGCTGCGATGTGACGT
CGCACTTTATCTAACTGTGGTTACATGTAGTCAGGTTAATTATTATTATTTTTTAAAATT
ATTTTTGCCTGCGAAGCTAGAGCGAAAGCAAACAACCTCATCATCTCCAGAGGAAGTGAT
CACCAGTCCTAAAATGGAGGATTAGAGCCAGACAAATTGGTGGATTTCGGAAGCGGAGCT
GAATTAACTGATCATATTCTCTATACGAACACGTTCACGTTATGAACAGATGGAGTTGCG
AGCGGCCGGTCCGTCCACGCCCTCCGTGATCTACGACGAGCAGGGGAAGGCGATCGACAC
CCGGGCGGAGGGAGGAGAACCCATCCACTTTGTGTTCGAGGAGATCCGCTGGAGCTCCGA
GATCAGCCGGGACGAGGCAGCCGGTCGTCTCGAGGTCACCTTTTATCCTTTCAAAAAGGT
AAAGTCTTTCGGTCATGTCCCGCGACTTCATTCATACCTTCCTTCCCATAAACACCGTCC
TTTCCCACGTCCTCAGGTGGCATACCTGCCTTTCCCGGAAGCCTTCAGCAGGGCAGAAGC
AGAGGGGAAACTGGTCCACTCCGTCCTGCTCTGGGGAGCGCTGGACGATCAGTCCTGCTG
AGGTCAGAACCAGAGGATTGTGCAGGGAATAAAGTGTGATAAAGTTATTATCCTGGCAGA
GTGCACGCCAGTCCGTCCAGTCGTATAGCCTGGAGGAATCTGGACGTCGCGTATTATTGA
CCAAGACTTCCACAGTACTATTCAGCTATTCCTACTGTGAAAGAAAATTTTATCGGACAA
ATTCCTCTGTACGTACAGATCAGATCAGATCAGATGTCTGCGAGTCTTTTCTTTCCACAC
ACACGACGTTTGGCAAGAACGCATCCCTTCTTCTAGAGAAATAATAGCAGGCAAATTGTT
GGGGCGAGGCACGAATGAAGGCAGCTGGTTCGAGAAGGGTTTTAAACTCGACCCGGTCTC
GCTTTGATTTGGACTCGATCTTGACCCGCTTAAGACTCGGTCTCGACTTGGACTTGACGG
CGGCGGCCTTAGCGATATGTTTACGTGCATACGGTACGTGATGAACGTAGAATATAAAAG
AAATCCGACCATGTGCACGAGACAGCAGTTCTCGGGGGGGGGTGATTGACAGCAGGTTGA
GGTACTTAATAATAATAATAATAATAATAATAATCGTCTCATTAGTTGTTATGGAATGTT
TATGAATGAATACACGGTTACTCGTATTTACACTCTCTTCTCTCTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGCAGGTTCGGGGCGAACTCTCCGGGAGACCGTCCTGGAAAGTTCGCC
CGTCCTGGCCTTGCTCAACCAGAGCTTCATCAGCAGCTGGTCTCTCGTCAAAGAGCTGGA
GGACCTGCAGGTGAAGCTTCACACGTTTTCTATGTTCATACTGTCGAAAAACAAGCCTGG
TTAGTGCGCTGTGCGGTGCGTTCACGGAGTAAGGGCGCTCCGACGGGTAAACCTGCTTTC
GTACGTTATTTTATTTCGATTTTTTTTCCTTCAAACTCCACGTAGGAAGTGGCCGCTTCC
GGGCTTGACGTCAAAAGACGAACGATAGATTCCGATCGATCGGAATGACATCTTCCGTTC
CCTCGTGTCTGCGTCTAGACGTTGGAACGTGGCAGCTTTTGTATCAGGTACAGTACTCGG
GTTTTCGGCTGAGCGAAAGTATCGGAACAGACCGTCTTGAAGTAAATAACACTTAATATT
CGGTCGCATATTGGTGGTTTCTCCCATCGACAGCTCGCTGGTCTTCATGTCGGTTTATCC
GTCGTTTTTTTTTGTTGTTGTTGTTTTTTTTTTTAACGACGGACGCGGTCTTCGCGGGCG
AAATCGAGAGCAGACGTCCGGAGCCGTTCGTTCTTCAAACGATCGATCCGACAGCGCGCA
ACTGGGCCGCAAGAAACGCCTGTCGTCCGTTTAACACGTGTAGAAATGAACGCTCTGGAA
TGCGGATCTGTCGCCTCGTATCCGTCATTTGCTCCCGAACCTCCGATGTATAGCGTGGAC
GACCGAATCGACCTTGCTGTTCCGATACTTTCGGAGGGGACCGTATAGTCGAACCGTACG
GACACGCGGAGAGCTCGTCAGCCATCTTTATTTCATCTGCATTACGGATGATAATAATAA
AAGACTAGAACGAATACGAGCTAGGACAGGTAAGGGCGTTGTCATGGTTACGGAGTGCCG
CCCGAGCCGTTTCGCTTCGCTCCAGCAAAAACACGTCATGTGATTTATTTATTTATTTAT
TTATTTATTTATTTTGCGTGCAGGTCGACGAGGAGAATCTGGACTTGAGTCAGAAGGCGC
GTTTACACCTGGAGCGGTACAGCTTCCCTGTGGAGATGATGGTGGCGTTGCCTAACGGGA
CCGTGGTAGGTCTGGGAATTTTATAACGCATACCTCGTGGTCTTGGGAAGAAATCGGCGA
GTTTGCCCGCCCGCCCGCACGCACGCCCGAGATCGAGTAGCGTAGCTCGGGTTGAAGAAA
CTATGAATAAAATTCACCAAAGTGCCGTGTTTTTATTTCATTCCTAGTGAATCCGCCTCG
CCTGCGTTTGCCGGACGATATATCGTCCCAGAAATAATTGCGATGAACGATATTATTGTC
ATTTTGAGACCGTTTTATTCCGCTGATATACTGAGAATATAACCGCGTAATAACGCGAGC
GCACCCTTTCAAAGCGCGATGCACTTTTAATTCTCCAGGAAGAATACTCAGACGCTGGAA
TACGATATCGTGAATTCTTTACGCTTCGGTTCTTCACCGTGCGTGTTTTAGTGCGTCGTT
ACGGGGACGGCGTATTCACGACTTTCTACCGAGCGCCTCACGGGTCCACGCGTGATTTCC
TGCGGGAGCGGGTCGCGATATCAGCTTCATGTCGTCTGATTAATCTCATACGCGTGTACA
GGATGCGTTTGGGCGAGTAAAGCGCTTAAAATCCCCGAGTTTATTGACTTTATCGACTGG
ATTATCTGAAACACTCGACGCGTCCGTTCTGGATTTTTCTTCTTCGGGAAGCGTCGTTAG
TGCGTCGTTAATGTCTCGCGTGTTTTCACACCGGCGTGATTTTATTCAAATCGGCGCGAG
CGCTCGCTACACGTCTGGGATCACGTTAAATTCGACGGATATCCGAAGGTTTTAATCTGT
CGGCCCCGGAAGTGGACGAGAGGACCGGAGCAGCGCGGGGAGGGTCTGACGATACCTGAT
TATCCGATGTTTGGTTTCTCCGCTGCGCAGGTTCACCACATCAACGCTAACAACTTCCTG
GACCAGACGTCCATGAAGCCGGAGGAGGACGTGTCGGGGTTCGGCTTCTCGGGCGGGTTC
GAGGACCCGTCTACCTCCGCGTACGTCCGCTTCCTGCAGGAGGGACTGGACAAGGCCAAG
GCTTACCTCCAGTCGTCATCGTCGTCGTCATAAACACACACGTCTCTCAGTCTAACAGCC
AGACTCCTCCATGTCTCACACACACGTGAACGAGGACTTATTTCCTGCACTGAATTCTGG
GAATGAATCTCTTATAGCGCGTGACTGCAGATTTTTTCAACACATGCTAATACAGTTTTG
TTTTTATAGTGACCAGGGTTTAAGTGTAGCGTGCTGGTTATGAGATTTTAACCTGAATTA
GCGATTAGCGATTAAGGCGATCATCAAAACTCCAGCTCTGAGGTAGAAAGAGGCGTTTAT
TAAAGGAATCGTTCGGCCAAAAAATCAGCCGAGACACGTTTGTTTCTTTGGCTTCACTCT
CACGAACACTTTTGGCCTAACTTTTGCTTTAATCTTTTTTTGTTTTGTTTTTTTTTTTTT
TAATTTTATTTTCCGCTATCTTGTTCACTTTTTGAGTCTTCACTCGCCACCGAATGTGCG
GCGGCCTGAGAAAACCCTTCACACGGTGAAAACACGCTTTCCTAAACAAACAAAACAAAA
CAAAACAAAAAAGTACGAAATATTCCTCTTTCGTATGAATCTAAACGCGAAGTTAAAGTT
CTAGCATTTTTATACCCGATATCTAGACCCGTGACCAGCGACGCACGCGGTAACCCTGCC
CCGATGTTGTCGTCGGACATCTTGAGTAGCGGTGTGACTCCAAACCGGCCGCCGGGTCGC
TCGCCGCGTCTCGACGGTCGGAGAAATCTTTTACGGTGTGCCATTCGAGTCGTGTCTGAA
ACTGTAAAAAAAAAAAAAAAAAAAAACCCGGGCTGAAGATCGTACGGCGTGAAGCCGGCT
TTAGCTGGCGAACTATTTCGAAATCTTTCAACAGACTCTTCATAGAGTCACATTTAATAA
ATCTTTCCGTAAAGGTAGAAAATAAATCAATAAAAACACGTCTTTTTAAAATTTTTTTGC
CTTTTCTTAAAACGAACGTACGACAAATTCTTTTCACTCATTTTTGCTTTGACGTGTGAC
GGGTTTTCCCAGAATGCCATACCCCCATCACACACACACACACACACACACACACACAAA
TATTATTTTTTAGTTAGTTTTCATGGACAATGGCACTCCAGTAGCTGCTCAGTGTGTTCA
GTGATGGAAGTGGGTTTGTGTTTTGCTCAGCCAAGATGAGTTAGAGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGGTTTATCCTCGGATGGAGCAGT
TTGTGACGGCCTGCTCTGAAAGCTCACTGTGGTGGGACCAGGCCTGATGTCTTTGTTCCA
GT
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