SelenoDB: selenoproteins database

Reference	Please, if you find SelenoDB useful for your research cite: Romagné F, Santesmasses D, White L, Sarangi GK, Mariotti M, Hübler R, Weihmann A, Parra G, Gladyshev VN, Guigó R and Castellano S SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans Nucleic Acids Res, 42, D437-D443 (2014) Castellano S, Gladyshev VN, Guigó R and Berry MJ SelenoDB 1.0: a database of selenoprotein genes, proteins and SECIS elements Nucleic Acids Res, 36, D339-D343 (2008) Some publications using our data: Kossinova O, Malygin A, Krol A, Karpova G A novel insight into the mechanism of mammalian selenoprotein synthesis RNA, 19, 1147-1158 (2013) Chen XS and Brown CM Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes Nucleic Acids Res., 40, 8862-8873 (2012) van Ommen B, El-Sohemy A, Hesketh J, Kaput J, Fenech M, Evelo CT, McArdle HJ, Bouwman J, Lietz G, Mathers JC, Fairweather-Tait S et al. The Micronutrient Genomics Project: a community-driven knowledge base for micronutrient research Genes & nutrition, 5, 285-296 (2010) Allmang C, Wurth L and Krol A The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated Biochim Biophys Acta, 1790, 1415-1423 (2009) Latreche L, Jean-Jean O, Driscoll DM and Chavatte L Novel structural determinants in human SECIS elements modulate the translational recoding of UGA as selenocysteine Nucleic Acids Res, 37, 5868-5880 (2009) Castellano S On the unique function of selenocysteine - Insights from the evolution of selenoproteins Biochim Biophys Acta, 1790, 1463-1470 (2009) Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, Egholm M, Hutchison S, Pettis JS, Lipkin WI and Evans JD Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees PLoS Pathog, 5, e1000466 (2009) Castellano S, Andres AM, Bosch E, Bayes M, Guigó R and Clark AG Low exchangeability of selenocysteine, the 21st amino acid, in vertebrate proteins Mol Biol Evol, 26, 2031-2040 (2009) Harrison P and Yu Z Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures BMC Genomics, 8, 371 (2007)

Reference

Please, if you find SelenoDB useful for your research cite:

Romagné F, Santesmasses D, White L, Sarangi GK, Mariotti M, Hübler R, Weihmann A, Parra G, Gladyshev VN, Guigó R and Castellano S
SelenoDB 2.0: annotation of selenoprotein genes in animals and their genetic diversity in humans
Nucleic Acids Res, 42, D437-D443 (2014)

Castellano S, Gladyshev VN, Guigó R and Berry MJ
SelenoDB 1.0: a database of selenoprotein genes, proteins and SECIS elements
Nucleic Acids Res, 36, D339-D343 (2008)

Some publications using our data:

Kossinova O, Malygin A, Krol A, Karpova G
A novel insight into the mechanism of mammalian selenoprotein synthesis
RNA, 19, 1147-1158 (2013)

Chen XS and Brown CM
Computational identification of new structured cis-regulatory elements in the 3'-untranslated region of human protein coding genes
Nucleic Acids Res., 40, 8862-8873 (2012)

van Ommen B, El-Sohemy A, Hesketh J, Kaput J, Fenech M, Evelo CT, McArdle HJ, Bouwman J, Lietz G, Mathers JC, Fairweather-Tait S et al.
The Micronutrient Genomics Project: a community-driven knowledge base for micronutrient research
Genes & nutrition, 5, 285-296 (2010)

Allmang C, Wurth L and Krol A
The selenium to selenoprotein pathway in eukaryotes: More molecular partners than anticipated
Biochim Biophys Acta, 1790, 1415-1423 (2009)

Latreche L, Jean-Jean O, Driscoll DM and Chavatte L
Novel structural determinants in human SECIS elements modulate the translational recoding of UGA
as selenocysteine
Nucleic Acids Res, 37, 5868-5880 (2009)

Castellano S
On the unique function of selenocysteine - Insights from the evolution of selenoproteins
Biochim Biophys Acta, 1790, 1463-1470 (2009)

Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, Desany B, Egholm M, Hutchison S, Pettis JS,
Lipkin WI and Evans JD
Genomic Analyses of the Microsporidian Nosema ceranae, an Emergent Pathogen of Honey Bees
PLoS Pathog, 5, e1000466 (2009)

Castellano S, Andres AM, Bosch E, Bayes M, Guigó R and Clark AG
Low exchangeability of selenocysteine, the 21st amino acid, in vertebrate proteins
Mol Biol Evol, 26, 2031-2040 (2009)

Harrison P and Yu Z
Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures
BMC Genomics, 8, 371 (2007)